1 HisKA#1
163-230 aa · 68 aa · 17.3% of protein
Raw token
HisKA:163:0.00000000000014:230:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCG_RS03015
Histidine kinase, Classic
Clostridioides difficile CD43 · GCF_000449025
ClassHKTypeClassicLength394 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000449025#QCG_RS03015Stable P2CS identifier used across views.
GenomeGCF_000449025Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length394 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage178 / 394 aa (45.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa394 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
275-384 aa · 110 aa · 27.9% of protein
Raw token
HATPase_c:275:9.05e-32:384:110:109- Raw architecture: HisKA:163:0.00000000000014:230:68:64#HATPase_c:275:9.05e-32:384:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000449025::NZ_AVGW01000022.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span37064-38943Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCG_0591RefSeq proteinWP_021370071.1
Context group ID
GCF_000449025::NZ_AVGW01000022.1::G00007Context members
QCG_RS03015QCG_RS03020
Partner locus tags
QCG_RS03015QCG_RS03020
Partner old locus tags
QCG_0591QCG_0592
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021370071.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCG_RS03015Primary locus identifier stored in the genes table.
Old locus tagQCG_0591Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGW01000022.1Sequence record reported by the local genomic context database.
Genomic interval37 064-38 248 nt1 185 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span37 064-38 943 ntGCF_000449025::NZ_AVGW01000022.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449025::NZ_AVGW01000022.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGW01000022.1All displayed genes belong to this local TCS context.
Neighborhood span37 064-38 943 nt1 880 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
37 064 nt38 943 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCG_RS03015GCF_000449025#QCG_RS03015
HKClassicCurrent focus
37 064-38 248 nt · Forward (+)
QCG_RS03020GCF_000449025#QCG_RS03020
RROmpR
38 239-38 943 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003215#QAC_RS0202670Use this link to inspect the representative gene detail.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1338482
Simplified PFAM architecture for HKOC_1338482
PFAM domain coverage: 286 / 535 aa (53.5%)
1 aa535 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[32-139] | HisKA[304-371] | HATPase_c[416-525]
- Domain count: 3
- Matched identifier: HKOC_1338482
- Positioned domains: DUF4118 32-139 ; HisKA 304-371 ; HATPase_c 416-525
Cluster members and taxonomy
Representative gene: GCF_000003215#QAC_RS0202670
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 266 · GCF_000449025
AssemblyASM44902v2 · Contighaploid
Genome composition4 329 033 bp · 28,0% GCClostridioides difficile CD43
Signal transduction countsGenes 99 · HK 46 · RR 51CheA 1 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key