1 Response_reg#1
31-108 aa · 78 aa · 40.2% of protein
Raw token
Response_reg:31:0.0000000000000108:108:78:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCE_RS16045
Response regulator NarL family
Clostridioides difficile CD42 · GCF_000449005
ClassRRTypeNarLLength194 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000449005#QCE_RS16045Stable P2CS identifier used across views.
GenomeGCF_000449005Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length194 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage135 / 194 aa (69.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa194 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
128-184 aa · 57 aa · 29.4% of protein
Raw token
HTH_LUXR:128:1.79e-17:184:57:58- Raw architecture: Response_reg:31:0.0000000000000108:108:78:111#HTH_LUXR:128:1.79e-17:184:57:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000449005::NZ_AVGV01000223.1::G00052
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span15486-16070Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCE_3239RefSeq proteinWP_021394220.1
Context group ID
GCF_000449005::NZ_AVGV01000223.1::G00052Context members
QCE_RS16045
Partner locus tags
QCE_RS16045
Partner old locus tags
QCE_3239
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021394220.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCE_RS16045Primary locus identifier stored in the genes table.
Old locus tagQCE_3239Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGV01000223.1Sequence record reported by the local genomic context database.
Genomic interval15 486-16 070 nt585 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 486-16 070 ntGCF_000449005::NZ_AVGV01000223.1::G00052
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000449005::NZ_AVGV01000223.1::G00052Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGV01000223.1All displayed genes belong to this local TCS context.
Neighborhood span15 486-16 070 nt585 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 486 nt16 070 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QCE_RS16045GCF_000449005#QCE_RS16045
RRNarLCurrent focus
15 486-16 070 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448905#QAY_RS15660Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2081558
Simplified PFAM architecture for RROC_2081558
PFAM domain coverage: 169 / 206 aa (82.0%)
1 aa206 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-119] | GerE[142-196]
- Domain count: 2
- Matched identifier: RROC_2081558
- Positioned domains: Response_reg 6-119 ; Response_reg 6-119 ; GerE 142-196 ; GerE 142-196
Cluster members and taxonomy
Representative gene: GCF_000448905#QAY_RS15660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 265 · GCF_000449005
AssemblyASM44900v2 · Contighaploid
Genome composition4 029 065 bp · 28,5% GCClostridioides difficile CD42
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key