1 Response_reg#1
5-117 aa · 113 aa · 48.7% of protein
Raw token
Response_reg:5:2.17e-22:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCA_RS14930
Response regulator, unclassified
Clostridioides difficile CD40 · GCF_000448965
ClassRRTypeunclassifiedLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000448965#QCA_RS14930Stable P2CS identifier used across views.
GenomeGCF_000448965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 232 aa (66.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HTH_AraC#2
186-226 aa · 41 aa · 17.7% of protein
Raw token
HTH_AraC:186:0.0000383:226:41:42- Raw architecture: Response_reg:5:2.17e-22:117:113:111#HTH_AraC:186:0.0000383:226:41:42
- Domain description: 1 Response_reg,1 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000448965::NZ_AVGT01000078.1::G00046
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1492-3809Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCA_3057RefSeq proteinWP_003436119.1
Context group ID
GCF_000448965::NZ_AVGT01000078.1::G00046Context members
QCA_RS14930QCA_RS14935
Partner locus tags
QCA_RS14930QCA_RS14935
Partner old locus tags
QCA_3057QCA_3058
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003436119.1Primary protein accession used for annex mappings.
UniProt accessionA0A0H3NA51Primary UniProt accession resolved in the annex database.
UniProt IDA0A0H3NA51_CLODCDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCA_RS14930Primary locus identifier stored in the genes table.
Old locus tagQCA_3057Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGT01000078.1Sequence record reported by the local genomic context database.
Genomic interval1 492-2 190 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 492-3 809 ntGCF_000448965::NZ_AVGT01000078.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448965::NZ_AVGT01000078.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGT01000078.1All displayed genes belong to this local TCS context.
Neighborhood span1 492-3 809 nt2 318 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 492 nt3 809 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCA_RS14930GCF_000448965#QCA_RS14930
RRunclassifiedCurrent focus
1 492-2 190 nt · Reverse (-)
QCA_RS14935GCF_000448965#QCA_RS14935
HKClassic
2 304-3 809 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012276945#GSQ50_RS11900Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_1059373
Simplified PFAM architecture for RROC_1059373
PFAM domain coverage: 189 / 234 aa (80.8%)
1 aa234 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[151-227]
- Domain count: 2
- Matched identifier: RROC_1059373
- Positioned domains: Response_reg 5-116 ; HTH_18 151-227
Cluster members and taxonomy
Representative gene: GCF_012276945#GSQ50_RS11900
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 263 · GCF_000448965
AssemblyASM44896v2 · Contighaploid
Genome composition4 069 381 bp · 28,5% GCClostridioides difficile CD40
Signal transduction countsGenes 96 · HK 46 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key