1 HisKA#1
308-374 aa · 67 aa · 12.7% of protein
Raw token
HisKA:308:0.0000000000000174:374:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCA_RS12215
Histidine kinase, Classic
Clostridioides difficile CD40 · GCF_000448965
ClassHKTypeClassicLength529 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000448965#QCA_RS12215Stable P2CS identifier used across views.
GenomeGCF_000448965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length529 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage153 / 529 aa (28.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
427-512 aa · 86 aa · 16.3% of protein
Raw token
HATPase_c:427:0.0000000443:512:90:109- Raw architecture: HisKA:308:0.0000000000000174:374:67:64#HATPase_c:427:0.0000000443:512:90:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000448965::NZ_AVGT01000070.1::G00038
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5396-7670Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCA_2501RefSeq proteinWP_009897499.1
Context group ID
GCF_000448965::NZ_AVGT01000070.1::G00038Context members
QCA_RS12210QCA_RS12215
Partner locus tags
QCA_RS12210QCA_RS12215
Partner old locus tags
QCA_2500QCA_2501
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_009897499.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCA_RS12215Primary locus identifier stored in the genes table.
Old locus tagQCA_2501Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGT01000070.1Sequence record reported by the local genomic context database.
Genomic interval6 081-7 670 nt1 590 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 396-7 670 ntGCF_000448965::NZ_AVGT01000070.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448965::NZ_AVGT01000070.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGT01000070.1All displayed genes belong to this local TCS context.
Neighborhood span5 396-7 670 nt2 275 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 396 nt7 670 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QCA_RS12210GCF_000448965#QCA_RS12210
RROmpR
5 396-6 112 nt · Forward (+)
QCA_RS12215GCF_000448965#QCA_RS12215
HKClassicCurrent focus
6 081-7 670 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0213940Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1359697
Simplified PFAM architecture for HKOC_1359697
PFAM domain coverage: 191 / 529 aa (36.1%)
1 aa529 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[254-294] | HisKA[309-374] | HATPase_c[426-509]
- Domain count: 3
- Matched identifier: HKOC_1359697
- Positioned domains: HAMP 254-294 ; HisKA 309-374 ; HATPase_c 426-509
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0213940
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 263 · GCF_000448965
AssemblyASM44896v2 · Contighaploid
Genome composition4 069 381 bp · 28,5% GCClostridioides difficile CD40
Signal transduction countsGenes 96 · HK 46 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key