1 Response_reg#1
5-114 aa · 110 aa · 48.7% of protein
Raw token
Response_reg:5:1.73e-19:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QCA_RS10830
Response regulator OmpR family
Clostridioides difficile CD40 · GCF_000448965
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000448965#QCA_RS10830Stable P2CS identifier used across views.
GenomeGCF_000448965Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 226 aa (82.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
147-223 aa · 77 aa · 34.1% of protein
Raw token
Trans_reg_C:147:2.92e-21:223:78:77- Raw architecture: Response_reg:5:1.73e-19:114:111:111#Trans_reg_C:147:2.92e-21:223:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000448965::NZ_AVGT01000062.1::G00035
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2203-2883Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQCA_2220RefSeq proteinWP_009897205.1
Context group ID
GCF_000448965::NZ_AVGT01000062.1::G00035Context members
QCA_RS10830
Partner locus tags
QCA_RS10830
Partner old locus tags
QCA_2220
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_009897205.1Primary protein accession used for annex mappings.
UniProt accessionQ188B3Primary UniProt accession resolved in the annex database.
UniProt IDQ188B3_CLOD6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQCA_RS10830Primary locus identifier stored in the genes table.
Old locus tagQCA_2220Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGT01000062.1Sequence record reported by the local genomic context database.
Genomic interval2 203-2 883 nt681 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 203-2 883 ntGCF_000448965::NZ_AVGT01000062.1::G00035
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448965::NZ_AVGT01000062.1::G00035Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGT01000062.1All displayed genes belong to this local TCS context.
Neighborhood span2 203-2 883 nt681 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 203 nt2 883 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QCA_RS10830GCF_000448965#QCA_RS10830
RROmpRCurrent focus
2 203-2 883 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS11125Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1407978
Simplified PFAM architecture for RROC_1407978
PFAM domain coverage: 185 / 226 aa (81.9%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1407978
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS11125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 263 · GCF_000448965
AssemblyASM44896v2 · Contighaploid
Genome composition4 069 381 bp · 28,5% GCClostridioides difficile CD40
Signal transduction countsGenes 96 · HK 46 · RR 50CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key