1 Response_reg#1
3-115 aa · 113 aa · 47.7% of protein
Raw token
Response_reg:3:1.78e-28:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QAS_RS19755
Response regulator OmpR family
Clostridioides difficile CD9 · GCF_000448865
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000448865#QAS_RS19755Stable P2CS identifier used across views.
GenomeGCF_000448865Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 237 aa (77.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
162-232 aa · 71 aa · 30.0% of protein
Raw token
Trans_reg_C:162:1.79e-33:232:73:77- Raw architecture: Response_reg:3:1.78e-28:115:113:111#Trans_reg_C:162:1.79e-33:232:73:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000448865::NZ_AVGK01000034.1::G00055
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span604-1314Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQAS_4022RefSeq proteinWP_021361619.1
Context group ID
GCF_000448865::NZ_AVGK01000034.1::G00055Context members
QAS_RS19755
Partner locus tags
QAS_RS19755
Partner old locus tags
QAS_4022
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021361619.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQAS_RS19755Primary locus identifier stored in the genes table.
Old locus tagQAS_4022Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGK01000034.1Sequence record reported by the local genomic context database.
Genomic interval604-1 314 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span604-1 314 ntGCF_000448865::NZ_AVGK01000034.1::G00055
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448865::NZ_AVGK01000034.1::G00055Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGK01000034.1All displayed genes belong to this local TCS context.
Neighborhood span604-1 314 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
604 nt1 314 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QAS_RS19755GCF_000448865#QAS_RS19755
RROmpRCurrent focus
604-1 314 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448865#QAS_RS19755The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962916
Simplified PFAM architecture for RROC_0962916
PFAM domain coverage: 184 / 237 aa (77.6%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-115] | Trans_reg_C[162-232]
- Domain count: 2
- Matched identifier: RROC_0962916
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; Trans_reg_C 162-232 ; Trans_reg_C 162-232
Cluster members and taxonomy
Representative gene: GCF_000448865#QAS_RS19755
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 254 · GCF_000448865
AssemblyASM44886v2 · Contighaploid
Genome composition4 310 458 bp · 29,0% GCClostridioides difficile CD9
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key