1 Response_reg#1
4-112 aa · 109 aa · 47.4% of protein
Raw token
Response_reg:4:3.22e-32:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QAQ_RS03825
Response regulator OmpR family
Clostridioides difficile CD8 · GCF_000448845
ClassRRTypeOmpRLength230 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000448845#QAQ_RS03825Stable P2CS identifier used across views.
GenomeGCF_000448845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length230 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 230 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa230 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
150-226 aa · 77 aa · 33.5% of protein
Raw token
Trans_reg_C:150:3.94e-30:226:77:77- Raw architecture: Response_reg:4:3.22e-32:112:110:111#Trans_reg_C:150:3.94e-30:226:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000448845::NZ_AVGJ01000055.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10527-12151Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQAQ_0783RefSeq proteinWP_021360284.1
Context group ID
GCF_000448845::NZ_AVGJ01000055.1::G00011Context members
QAQ_RS03825QAQ_RS03830
Partner locus tags
QAQ_RS03825QAQ_RS03830
Partner old locus tags
QAQ_0783QAQ_0784
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021360284.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQAQ_RS03825Primary locus identifier stored in the genes table.
Old locus tagQAQ_0783Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGJ01000055.1Sequence record reported by the local genomic context database.
Genomic interval10 527-11 219 nt693 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 527-12 151 ntGCF_000448845::NZ_AVGJ01000055.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448845::NZ_AVGJ01000055.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGJ01000055.1All displayed genes belong to this local TCS context.
Neighborhood span10 527-12 151 nt1 625 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 527 nt12 151 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QAQ_RS03825GCF_000448845#QAQ_RS03825
RROmpRCurrent focus
10 527-11 219 nt · Forward (+)
QAQ_RS03830GCF_000448845#QAQ_RS03830
HKClassic
11 216-12 151 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448845#QAQ_RS03825The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1202417
Simplified PFAM architecture for RROC_1202417
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[150-226]
- Domain count: 2
- Matched identifier: RROC_1202417
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 150-226 ; Trans_reg_C 150-226
Cluster members and taxonomy
Representative gene: GCF_000448845#QAQ_RS03825
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 34 over 34 total members. Page 1 / 1.
GCF_000448845#QAQ_RS03825 (representative) | ||||
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 253 · GCF_000448845
AssemblyASM44884v2 · Contighaploid
Genome composition4 044 267 bp · 28,5% GCClostridioides difficile CD8
Signal transduction countsGenes 93 · HK 45 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key