1 Response_reg#1
5-116 aa · 112 aa · 93.3% of protein
Raw token
Response_reg:5:2.62e-33:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QAQ_RS02490
Response regulator, CheY family
Clostridioides difficile CD8 · GCF_000448845
ClassRRTypeCheYLength120 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000448845#QAQ_RS02490Stable P2CS identifier used across views.
GenomeGCF_000448845Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length120 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage112 / 120 aa (93.3%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:2.62e-33:116:112:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000448845::NZ_AVGJ01000028.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span9046-9408Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQAQ_0502RefSeq proteinWP_003439098.1
Context group ID
GCF_000448845::NZ_AVGJ01000028.1::G00006Context members
QAQ_RS02490
Partner locus tags
QAQ_RS02490
Partner old locus tags
QAQ_0502
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003439098.1Primary protein accession used for annex mappings.
UniProt accessionQ188X9Primary UniProt accession resolved in the annex database.
UniProt IDQ188X9_CLOD6Display identifier provided by UniProt.
GO / PubMed1 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQAQ_RS02490Primary locus identifier stored in the genes table.
Old locus tagQAQ_0502Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGJ01000028.1Sequence record reported by the local genomic context database.
Genomic interval9 046-9 408 nt363 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span9 046-9 408 ntGCF_000448845::NZ_AVGJ01000028.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448845::NZ_AVGJ01000028.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGJ01000028.1All displayed genes belong to this local TCS context.
Neighborhood span9 046-9 408 nt363 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 046 nt9 408 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QAQ_RS02490GCF_000448845#QAQ_RS02490
RRCheYCurrent focus
9 046-9 408 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS03235Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2434070
Simplified PFAM architecture for RROC_2434070
PFAM domain coverage: 111 / 120 aa (92.5%)
1 aa120 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-115]
- Domain count: 1
- Matched identifier: RROC_2434070
- Positioned domains: Response_reg 5-115 ; Response_reg 5-115
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS03235
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 253 · GCF_000448845
AssemblyASM44884v2 · Contighaploid
Genome composition4 044 267 bp · 28,5% GCClostridioides difficile CD8
Signal transduction countsGenes 93 · HK 45 · RR 48CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key