1 Response_reg#1
4-113 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:4:3.3e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QAO_RS12505
Response regulator OmpR family
Clostridioides difficile CD3 · GCF_000448825
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000448825#QAO_RS12505Stable P2CS identifier used across views.
GenomeGCF_000448825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 235 aa (79.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 32.8% of protein
Raw token
Trans_reg_C:151:3.95e-32:227:77:77- Raw architecture: Response_reg:4:3.3e-28:113:111:111#Trans_reg_C:151:3.95e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000448825::NZ_AVGI01000237.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26032-28043Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQAO_2542RefSeq proteinWP_021359503.1
Context group ID
GCF_000448825::NZ_AVGI01000237.1::G00040Context members
QAO_RS12500QAO_RS12505
Partner locus tags
QAO_RS12500QAO_RS12505
Partner old locus tags
QAO_2541QAO_2542
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021359503.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQAO_RS12505Primary locus identifier stored in the genes table.
Old locus tagQAO_2542Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGI01000237.1Sequence record reported by the local genomic context database.
Genomic interval27 336-28 043 nt708 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span26 032-28 043 ntGCF_000448825::NZ_AVGI01000237.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448825::NZ_AVGI01000237.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGI01000237.1All displayed genes belong to this local TCS context.
Neighborhood span26 032-28 043 nt2 012 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 032 nt28 043 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QAO_RS12500GCF_000448825#QAO_RS12500
HKClassic
26 032-27 342 nt · Reverse (-)
QAO_RS12505GCF_000448825#QAO_RS12505
RROmpRCurrent focus
27 336-28 043 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448825#QAO_RS12505The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1018265
Simplified PFAM architecture for RROC_1018265
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[151-226]
- Domain count: 2
- Matched identifier: RROC_1018265
- Positioned domains: Response_reg 4-112 ; Response_reg 4-112 ; Trans_reg_C 151-226 ; Trans_reg_C 151-226
Cluster members and taxonomy
Representative gene: GCF_000448825#QAO_RS12505
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 252 · GCF_000448825
AssemblyASM44882v2 · Contighaploid
Genome composition4 072 944 bp · 28,0% GCClostridioides difficile CD3
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key