1 Response_reg#1
12-124 aa · 113 aa · 46.5% of protein
Raw token
Response_reg:12:0.0000000000000412:124:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QAO_RS08540
Response regulator LytTR family
Clostridioides difficile CD3 · GCF_000448825
ClassRRTypeLytTRLength243 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000448825#QAO_RS08540Stable P2CS identifier used across views.
GenomeGCF_000448825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length243 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage194 / 243 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa243 aa
Domain-by-domain annotation2 items
2 LytTR#2
144-224 aa · 81 aa · 33.3% of protein
Raw token
LytTR:144:5.24e-18:224:87:98- Raw architecture: Response_reg:12:0.0000000000000412:124:117:111#LytTR:144:5.24e-18:224:87:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000448825::NZ_AVGI01000147.1::G00027
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span3176-3892Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQAO_1734RefSeq proteinWP_225548886.1
Context group ID
GCF_000448825::NZ_AVGI01000147.1::G00027Context members
QAO_RS08540
Partner locus tags
QAO_RS08540
Partner old locus tags
QAO_1734
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_225548886.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQAO_RS08540Primary locus identifier stored in the genes table.
Old locus tagQAO_1734Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGI01000147.1Sequence record reported by the local genomic context database.
Genomic interval3 176-3 892 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span3 176-3 892 ntGCF_000448825::NZ_AVGI01000147.1::G00027
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448825::NZ_AVGI01000147.1::G00027Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGI01000147.1All displayed genes belong to this local TCS context.
Neighborhood span3 176-3 892 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 176 nt3 892 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QAO_RS08540GCF_000448825#QAO_RS08540
RRLytTRCurrent focus
3 176-3 892 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154625#QAB_RS0210980Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0824803
Simplified PFAM architecture for RROC_0824803
PFAM domain coverage: 197 / 243 aa (81.1%)
1 aa243 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[12-123] | LytTR[146-230]
- Domain count: 2
- Matched identifier: RROC_0824803
- Positioned domains: Response_reg 12-123 ; Response_reg 12-123 ; LytTR 146-230 ; LytTR 146-230
Cluster members and taxonomy
Representative gene: GCF_000154625#QAB_RS0210980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 252 · GCF_000448825
AssemblyASM44882v2 · Contighaploid
Genome composition4 072 944 bp · 28,0% GCClostridioides difficile CD3
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key