1 Response_reg#1
5-114 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:5:4.82e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QAO_RS07910
Response regulator OmpR family
Clostridioides difficile CD3 · GCF_000448825
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000448825#QAO_RS07910Stable P2CS identifier used across views.
GenomeGCF_000448825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 233 aa (79.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-229 aa · 75 aa · 32.2% of protein
Raw token
Trans_reg_C:155:1.32e-34:229:75:77- Raw architecture: Response_reg:5:4.82e-35:114:111:111#Trans_reg_C:155:1.32e-34:229:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000448825::NZ_AVGI01000128.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span10684-12517Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQAO_1609RefSeq proteinWP_003436401.1
Context group ID
GCF_000448825::NZ_AVGI01000128.1::G00023Context members
QAO_RS07910QAO_RS07915
Partner locus tags
QAO_RS07910QAO_RS07915
Partner old locus tags
QAO_1609QAO_1610
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_003436401.1Primary protein accession used for annex mappings.
UniProt accessionQ186H9Primary UniProt accession resolved in the annex database.
UniProt IDQ186H9_CLOD6Display identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQAO_RS07910Primary locus identifier stored in the genes table.
Old locus tagQAO_1609Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGI01000128.1Sequence record reported by the local genomic context database.
Genomic interval10 684-11 385 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span10 684-12 517 ntGCF_000448825::NZ_AVGI01000128.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448825::NZ_AVGI01000128.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGI01000128.1All displayed genes belong to this local TCS context.
Neighborhood span10 684-12 517 nt1 834 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
10 684 nt12 517 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QAO_RS07910GCF_000448825#QAO_RS07910
RROmpRCurrent focus
10 684-11 385 nt · Forward (+)
QAO_RS07915GCF_000448825#QAO_RS07915
HKClassic
11 435-12 517 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000009205#CD630_RS08860Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080372
Simplified PFAM architecture for RROC_1080372
PFAM domain coverage: 185 / 233 aa (79.4%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1080372
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-230 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_000009205#CD630_RS08860
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 252 · GCF_000448825
AssemblyASM44882v2 · Contighaploid
Genome composition4 072 944 bp · 28,0% GCClostridioides difficile CD3
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key