1 Response_reg#1
5-114 aa · 110 aa · 47.0% of protein
Raw token
Response_reg:5:4.62e-28:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QAO_RS04825
Response regulator OmpR family
Clostridioides difficile CD3 · GCF_000448825
ClassRRTypeOmpRLength234 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000448825#QAO_RS04825Stable P2CS identifier used across views.
GenomeGCF_000448825Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length234 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 234 aa (77.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
160-230 aa · 71 aa · 30.3% of protein
Raw token
Trans_reg_C:160:1.24e-25:230:74:77- Raw architecture: Response_reg:5:4.62e-28:114:111:111#Trans_reg_C:160:1.24e-25:230:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000448825::NZ_AVGI01000078.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span18300-20493Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQAO_0980RefSeq proteinWP_021359050.1
Context group ID
GCF_000448825::NZ_AVGI01000078.1::G00014Context members
QAO_RS04825QAO_RS04830
Partner locus tags
QAO_RS04825QAO_RS04830
Partner old locus tags
QAO_0980QAO_0981
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021359050.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQAO_RS04825Primary locus identifier stored in the genes table.
Old locus tagQAO_0980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGI01000078.1Sequence record reported by the local genomic context database.
Genomic interval18 300-19 004 nt705 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span18 300-20 493 ntGCF_000448825::NZ_AVGI01000078.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448825::NZ_AVGI01000078.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGI01000078.1All displayed genes belong to this local TCS context.
Neighborhood span18 300-20 493 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
18 300 nt20 493 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QAO_RS04825GCF_000448825#QAO_RS04825
RROmpRCurrent focus
18 300-19 004 nt · Forward (+)
QAO_RS04830GCF_000448825#QAO_RS04830
HKClassic
19 006-20 493 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448825#QAO_RS04825The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1049062
Simplified PFAM architecture for RROC_1049062
PFAM domain coverage: 181 / 234 aa (77.4%)
1 aa234 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[159-230]
- Domain count: 2
- Matched identifier: RROC_1049062
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 159-230 ; Trans_reg_C 159-230
Cluster members and taxonomy
Representative gene: GCF_000448825#QAO_RS04825
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 252 · GCF_000448825
AssemblyASM44882v2 · Contighaploid
Genome composition4 072 944 bp · 28,0% GCClostridioides difficile CD3
Signal transduction countsGenes 97 · HK 46 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key