1 Response_reg#1
5-63 aa · 59 aa · 81.9% of protein
Raw token
Response_reg:5:0.000000000000786:63:59:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QC5_RS08355
Response regulator, CheY family
Clostridioides difficile CD34 · GCF_000448765
ClassRRTypeCheYLength72 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000448765#QC5_RS08355Stable P2CS identifier used across views.
GenomeGCF_000448765Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length72 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage59 / 72 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa72 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:5:0.000000000000786:63:59:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000448765::NZ_AVGQ01000032.1::G00025
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span73207-73425Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQC5_1679RefSeq proteinWP_021366621.1
Context group ID
GCF_000448765::NZ_AVGQ01000032.1::G00025Context members
QC5_RS08355
Partner locus tags
QC5_RS08355
Partner old locus tags
QC5_1679
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021366621.1Primary protein accession used for annex mappings.
UniProt accessionA0A069AZK6Primary UniProt accession resolved in the annex database.
UniProt IDA0A069AZK6_CLODIDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQC5_RS08355Primary locus identifier stored in the genes table.
Old locus tagQC5_1679Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGQ01000032.1Sequence record reported by the local genomic context database.
Genomic interval73 207-73 425 nt219 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 207-73 425 ntGCF_000448765::NZ_AVGQ01000032.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448765::NZ_AVGQ01000032.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGQ01000032.1All displayed genes belong to this local TCS context.
Neighborhood span73 207-73 425 nt219 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 207 nt73 425 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
QC5_RS08355GCF_000448765#QC5_RS08355
RRCheYCurrent focus
73 207-73 425 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448765#QC5_RS08355The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2477754
Simplified PFAM architecture for RROC_2477754
PFAM domain coverage: 65 / 72 aa (90.3%)
1 aa72 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[5-69]
- Domain count: 1
- Matched identifier: RROC_2477754
- Positioned domains: Response_reg 5-69 ; Response_reg 5-69
Cluster members and taxonomy
Representative gene: GCF_000448765#QC5_RS08355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 260 · GCF_000448765
AssemblyASM44876v2 · Contighaploid
Genome composition4 017 712 bp · 28,0% GCClostridioides difficile CD34
Signal transduction countsGenes 98 · HK 47 · RR 51CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key