1 HisKA#1
2-68 aa · 67 aa · 30.6% of protein
Raw token
HisKA:2:0.000000000000411:68:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QC1_RS04270
Histidine kinase, Classic
Clostridioides difficile CD21 · GCF_000448745
ClassHKTypeClassicLength219 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000448745#QC1_RS04270Stable P2CS identifier used across views.
GenomeGCF_000448745Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length219 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 219 aa (78.1%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa219 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
115-218 aa · 104 aa · 47.5% of protein
Raw token
HATPase_c:115:2.46e-28:218:106:109- Raw architecture: HisKA:2:0.000000000000411:68:67:64#HATPase_c:115:2.46e-28:218:106:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000448745::NZ_AVGO01000035.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span15370-16975Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQC1_0776RefSeq proteinWP_237671536.1
Context group ID
GCF_000448745::NZ_AVGO01000035.1::G00013Context members
QC1_RS04265QC1_RS04270
Partner locus tags
QC1_RS04265QC1_RS04270
Partner old locus tags
QC1_0774QC1_0776
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_237671536.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQC1_RS04270Primary locus identifier stored in the genes table.
Old locus tagQC1_0776Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGO01000035.1Sequence record reported by the local genomic context database.
Genomic interval16 316-16 975 nt660 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span15 370-16 975 ntGCF_000448745::NZ_AVGO01000035.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448745::NZ_AVGO01000035.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGO01000035.1All displayed genes belong to this local TCS context.
Neighborhood span15 370-16 975 nt1 606 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
15 370 nt16 975 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
QC1_RS04265GCF_000448745#QC1_RS04265
RROmpR
15 370-16 059 nt · Forward (+)
QC1_RS04270GCF_000448745#QC1_RS04270
HKClassicCurrent focus
16 316-16 975 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448745#QC1_RS04270The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2928817
Simplified PFAM architecture for HKOC_2928817
PFAM domain coverage: 171 / 219 aa (78.1%)
1 aa219 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[2-68] | HATPase_c[115-218]
- Domain count: 2
- Matched identifier: HKOC_2928817
- Positioned domains: HisKA 2-68 ; HATPase_c 115-218
Cluster members and taxonomy
Representative gene: GCF_000448745#QC1_RS04270
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 258 · GCF_000448745
AssemblyASM44874v2 · Contighaploid
Genome composition4 041 992 bp · 28,5% GCClostridioides difficile CD21
Signal transduction countsGenes 99 · HK 47 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key