1 Response_reg#1
5-114 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:5:6.84e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
QAW_RS17155
Response regulator OmpR family
Clostridioides difficile CD17 · GCF_000448725
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpentad
Gene IDGCF_000448725#QAW_RS17155Stable P2CS identifier used across views.
GenomeGCF_000448725Bacteria; Bacillati; Bacillota; Clostridia; Peptostreptococcales; Peptostreptococcaceae; Clostridioides
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 232 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-232 aa · 78 aa · 33.6% of protein
Raw token
Trans_reg_C:155:4.62e-28:232:78:77- Raw architecture: Response_reg:5:6.84e-36:114:111:111#Trans_reg_C:155:4.62e-28:232:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpentadGCF_000448725::NZ_AVGM01000165.1::G00050
Group size55 locus tags listed below.
HK / RR2 / 3Counts resolved for the local TCS neighborhood.
Context span19198-24923Genomic interval covered by the local TCS group.
Identifiers
Old locus tagQAW_3535RefSeq proteinWP_021363030.1
Context group ID
GCF_000448725::NZ_AVGM01000165.1::G00050Context members
QAW_RS17150QAW_RS17155QAW_RS17160QAW_RS17165QAW_RS17170
Partner locus tags
QAW_RS17150QAW_RS17155QAW_RS17160QAW_RS17165QAW_RS17170
Partner old locus tags
QAW_3534QAW_3535QAW_3536QAW_3537QAW_3538
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_021363030.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagQAW_RS17155Primary locus identifier stored in the genes table.
Old locus tagQAW_3535Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_AVGM01000165.1Sequence record reported by the local genomic context database.
Genomic interval20 349-21 047 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span19 198-24 923 ntGCF_000448725::NZ_AVGM01000165.1::G00050
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000448725::NZ_AVGM01000165.1::G00050Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpentadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AVGM01000165.1All displayed genes belong to this local TCS context.
Neighborhood span19 198-24 923 nt5 726 nt
Members51 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
19 198 nt24 923 nt
Neighborhood gene cards
5 genes in the current local neighborhood.
QAW_RS17150GCF_000448725#QAW_RS17150
HKClassic
19 198-20 313 nt · Reverse (-)
QAW_RS17155GCF_000448725#QAW_RS17155
RROmpRCurrent focus
20 349-21 047 nt · Reverse (-)
QAW_RS17160GCF_000448725#QAW_RS17160
RROmpR
21 429-22 109 nt · Reverse (-)
QAW_RS17165GCF_000448725#QAW_RS17165
HKClassic
22 159-24 174 nt · Reverse (-)
QAW_RS17170GCF_000448725#QAW_RS17170
RROmpR
24 246-24 923 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000448725#QAW_RS17155The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1121682
Simplified PFAM architecture for RROC_1121682
PFAM domain coverage: 187 / 232 aa (80.6%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1121682
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000448725#QAW_RS17155
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 151 256 · GCF_000448725
AssemblyASM44872v2 · Contighaploid
Genome composition4 158 388 bp · 28,5% GCClostridioides difficile CD17
Signal transduction countsGenes 98 · HK 47 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderPeptostreptococcalesFamilyPeptostreptococcaceaeGenusClostridioides
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Peptostreptococcales6Peptostreptococcaceae7Clostridioides
Related genes
Preview from the same derived genome key