1 HAMP#1
171-241 aa · 71 aa · 15.0% of protein
Raw token
HAMP:171:0.000000057:241:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
I911_RS14110
Histidine kinase, Classic
Enterococcus faecium E155 · GCF_000442045
ClassHKTypeClassicLength472 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000442045#I911_RS14110Stable P2CS identifier used across views.
GenomeGCF_000442045Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length472 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage246 / 472 aa (52.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa472 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-308 aa · 63 aa · 13.3% of protein
Raw token
HisKA:246:0.0000000000726:308:63:643 HATPase_c#3
353-464 aa · 112 aa · 23.7% of protein
Raw token
HATPase_c:353:6.45e-33:464:112:109- Raw architecture: HAMP:171:0.000000057:241:71:69#HisKA:246:0.0000000000726:308:63:64#HATPase_c:353:6.45e-33:464:112:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000442045::NZ_AUWX01000281.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span328-2426Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000442045::NZ_AUWX01000281.1::G00023Context members
I911_RS14105I911_RS14110
Partner locus tags
I911_RS14105I911_RS14110
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_042957332.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagI911_RS14110Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUWX01000281.1Sequence record reported by the local genomic context database.
Genomic interval1 008-2 426 nt1 419 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span328-2 426 ntGCF_000442045::NZ_AUWX01000281.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000442045::NZ_AUWX01000281.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUWX01000281.1All displayed genes belong to this local TCS context.
Neighborhood span328-2 426 nt2 099 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
328 nt2 426 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
I911_RS14105GCF_000442045#I911_RS14105
RROmpR
328-1 011 nt · Forward (+)
I911_RS14110GCF_000442045#I911_RS14110
HKClassicCurrent focus
1 008-2 426 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000442045#I911_RS14110The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1696974
Simplified PFAM architecture for HKOC_1696974
PFAM domain coverage: 173 / 472 aa (36.7%)
1 aa472 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[246-307] | HATPase_c[354-464]
- Domain count: 2
- Matched identifier: HKOC_1696974
- Positioned domains: HisKA 246-307 ; HATPase_c 354-464
Cluster members and taxonomy
Representative gene: GCF_000442045#I911_RS14110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 303 769 · GCF_000442045
AssemblyEfmE155_v1.0 · Contighaploid
Genome composition3 066 426 bp · 38,0% GCEnterococcus faecium E155
Signal transduction countsGenes 42 · HK 20 · RR 22CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key