1 HisKA#1
230-290 aa · 61 aa · 13.7% of protein
Raw token
HisKA:230:0.000000000322:290:61:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KE3_RS04985
Histidine kinase, Classic
Streptococcus lutetiensis 033 · GCF_000441535
ClassHKTypeClassicLength445 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000441535#KE3_RS04985Stable P2CS identifier used across views.
GenomeGCF_000441535Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length445 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage163 / 445 aa (36.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa445 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
343-444 aa · 102 aa · 22.9% of protein
Raw token
HATPase_c:343:5.88e-18:444:104:109- Raw architecture: HisKA:230:0.000000000322:290:61:64#HATPase_c:343:5.88e-18:444:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000441535::NC_021900.1::G00003
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span982120-983457Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKE3_1028RefSeq proteinWP_020916787.1
Context group ID
GCF_000441535::NC_021900.1::G00003Context members
KE3_RS04985
Partner locus tags
KE3_RS04985
Partner old locus tags
KE3_1028
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020916787.1Primary protein accession used for annex mappings.
UniProt accessionA0AB33ALI8Primary UniProt accession resolved in the annex database.
UniProt IDA0AB33ALI8_9STREDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKE3_RS04985Primary locus identifier stored in the genes table.
Old locus tagKE3_1028Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021900.1Sequence record reported by the local genomic context database.
Genomic interval982 120-983 457 nt1 338 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span982 120-983 457 ntGCF_000441535::NC_021900.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000441535::NC_021900.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021900.1All displayed genes belong to this local TCS context.
Neighborhood span982 120-983 457 nt1 338 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
982 120 nt983 457 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
KE3_RS04985GCF_000441535#KE3_RS04985
HKClassicCurrent focus
982 120-983 457 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000441535#KE3_RS04985The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2022356
Simplified PFAM architecture for HKOC_2022356
PFAM domain coverage: 165 / 445 aa (37.1%)
1 aa445 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[232-291] | HATPase_c[340-444]
- Domain count: 2
- Matched identifier: HKOC_2022356
- Positioned domains: HisKA 232-291 ; HATPase_c 340-444
Cluster members and taxonomy
Representative gene: GCF_000441535#KE3_RS04985
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 076 934 · GCF_000441535
AssemblyASM44153v1 · Complete Genomehaploid
Genome composition1 975 547 bp · 37,5% GCStreptococcus lutetiensis 033
Signal transduction countsGenes 24 · HK 13 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key