1 Response_reg#1
7-119 aa · 113 aa · 52.8% of protein
Raw token
Response_reg:7:3.29e-21:119:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
KE3_RS02380
Response regulator NarL family
Streptococcus lutetiensis 033 · GCF_000441535
ClassRRTypeNarLLength214 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000441535#KE3_RS02380Stable P2CS identifier used across views.
GenomeGCF_000441535Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Streptococcaceae; Streptococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length214 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage171 / 214 aa (79.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa214 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
146-203 aa · 58 aa · 27.1% of protein
Raw token
HTH_LUXR:146:4.11e-25:203:58:58- Raw architecture: Response_reg:7:3.29e-21:119:113:111#HTH_LUXR:146:4.11e-25:203:58:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000441535::NC_021900.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span440930-442583Genomic interval covered by the local TCS group.
Identifiers
Old locus tagKE3_0483RefSeq proteinWP_020916314.1
Context group ID
GCF_000441535::NC_021900.1::G00001Context members
KE3_RS02375KE3_RS02380
Partner locus tags
KE3_RS02375KE3_RS02380
Partner old locus tags
KE3_0482KE3_0483
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_020916314.1Primary protein accession used for annex mappings.
UniProt accessionA0AB38G3K8Primary UniProt accession resolved in the annex database.
UniProt IDA0AB38G3K8_9STREDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagKE3_RS02380Primary locus identifier stored in the genes table.
Old locus tagKE3_0483Legacy locus tag recovered from the local context mapping.
Contig / repliconNC_021900.1Sequence record reported by the local genomic context database.
Genomic interval441 939-442 583 nt645 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span440 930-442 583 ntGCF_000441535::NC_021900.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000441535::NC_021900.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNC_021900.1All displayed genes belong to this local TCS context.
Neighborhood span440 930-442 583 nt1 654 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
440 930 nt442 583 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
KE3_RS02375GCF_000441535#KE3_RS02375
HKClassic
440 930-441 955 nt · Forward (+)
KE3_RS02380GCF_000441535#KE3_RS02380
RRNarLCurrent focus
441 939-442 583 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000441535#KE3_RS02380The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1935979
Simplified PFAM architecture for RROC_1935979
PFAM domain coverage: 168 / 214 aa (78.5%)
1 aa214 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[7-119] | GerE[149-203]
- Domain count: 2
- Matched identifier: RROC_1935979
- Positioned domains: Response_reg 7-119 ; Response_reg 7-119 ; GerE 149-203 ; GerE 149-203
Cluster members and taxonomy
Representative gene: GCF_000441535#KE3_RS02380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 076 934 · GCF_000441535
AssemblyASM44153v1 · Complete Genomehaploid
Genome composition1 975 547 bp · 37,5% GCStreptococcus lutetiensis 033
Signal transduction countsGenes 24 · HK 13 · RR 11CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyStreptococcaceaeGenusStreptococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Streptococcaceae7Streptococcus
Related genes
Preview from the same derived genome key