1 Response_reg#1
7-116 aa · 110 aa · 46.6% of protein
Raw token
Response_reg:7:1.5e-35:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G617_RS0109415
Response regulator OmpR family
Dorea longicatena AGR2136 · GCF_000424345
ClassRRTypeOmpRLength236 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424345#G617_RS0109415Stable P2CS identifier used across views.
GenomeGCF_000424345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 236 aa (79.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-234 aa · 77 aa · 32.6% of protein
Raw token
Trans_reg_C:158:2.07e-33:234:77:77- Raw architecture: Response_reg:7:1.5e-35:116:111:111#Trans_reg_C:158:2.07e-33:234:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424345::NZ_AUJS01000037.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span29404-31279Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424345::NZ_AUJS01000037.1::G00036Context members
G617_RS0109410G617_RS0109415
Partner locus tags
G617_RS0109410G617_RS0109415
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_021739282.1Primary protein accession used for annex mappings.
UniProt accessionA0A844E7L7Primary UniProt accession resolved in the annex database.
UniProt IDA0A844E7L7_EUBRADisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG617_RS0109415Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJS01000037.1Sequence record reported by the local genomic context database.
Genomic interval30 569-31 279 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span29 404-31 279 ntGCF_000424345::NZ_AUJS01000037.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424345::NZ_AUJS01000037.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJS01000037.1All displayed genes belong to this local TCS context.
Neighborhood span29 404-31 279 nt1 876 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
29 404 nt31 279 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G617_RS0109410GCF_000424345#G617_RS0109410
HKClassic
29 404-30 582 nt · Forward (+)
G617_RS0109415GCF_000424345#G617_RS0109415
RROmpRCurrent focus
30 569-31 279 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000420885#G593_RS0113135Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0989689
Simplified PFAM architecture for RROC_0989689
PFAM domain coverage: 186 / 236 aa (78.8%)
1 aa236 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[159-234]
- Domain count: 2
- Matched identifier: RROC_0989689
- Positioned domains: Response_reg 7-116 ; Response_reg 7-116 ; Trans_reg_C 159-234 ; Trans_reg_C 159-234
Cluster members and taxonomy
Representative gene: GCF_000420885#G593_RS0113135
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 698 · GCF_000424345
AssemblyASM42434v1 · Scaffoldhaploid
Genome composition3 595 079 bp · 41,0% GCDorea longicatena AGR2136
Signal transduction countsGenes 96 · HK 43 · RR 50CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key