1 Response_reg#1
5-105 aa · 101 aa · 18.4% of protein
Raw token
Response_reg:5:8.34e-31:105:102:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G617_RS0103730
Response regulator, unclassified
Dorea longicatena AGR2136 · GCF_000424345
ClassRRTypeunclassifiedLength550 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424345#G617_RS0103730Stable P2CS identifier used across views.
GenomeGCF_000424345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length550 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage169 / 550 aa (30.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa550 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
467-497 aa · 31 aa · 5.6% of protein
Raw token
HTH_AraC:467:0.000087:497:31:423 HTH_AraC#3
512-548 aa · 37 aa · 6.7% of protein
Raw token
HTH_AraC:512:0.00000000363:548:37:42- Raw architecture: Response_reg:5:8.34e-31:105:102:111#HTH_AraC:467:0.000087:497:31:42#HTH_AraC:512:0.00000000363:548:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424345::NZ_AUJS01000011.1::G00017
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38138-41520Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424345::NZ_AUJS01000011.1::G00017Context members
G617_RS0103725G617_RS0103730
Partner locus tags
G617_RS0103725G617_RS0103730
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_028086332.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG617_RS0103730Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJS01000011.1Sequence record reported by the local genomic context database.
Genomic interval39 868-41 520 nt1 653 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span38 138-41 520 ntGCF_000424345::NZ_AUJS01000011.1::G00017
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424345::NZ_AUJS01000011.1::G00017Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJS01000011.1All displayed genes belong to this local TCS context.
Neighborhood span38 138-41 520 nt3 383 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 138 nt41 520 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G617_RS0103725GCF_000424345#G617_RS0103725
HKClassic
38 138-39 871 nt · Forward (+)
G617_RS0103730GCF_000424345#G617_RS0103730
RRunclassifiedCurrent focus
39 868-41 520 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424345#G617_RS0103730The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0073654
Simplified PFAM architecture for RROC_0073654
PFAM domain coverage: 187 / 550 aa (34.0%)
1 aa550 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-113] | HTH_18[471-548]
- Domain count: 2
- Matched identifier: RROC_0073654
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; HTH_18 471-548 ; HTH_18 471-548
Cluster members and taxonomy
Representative gene: GCF_000424345#G617_RS0103730
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 698 · GCF_000424345
AssemblyASM42434v1 · Scaffoldhaploid
Genome composition3 595 079 bp · 41,0% GCDorea longicatena AGR2136
Signal transduction countsGenes 96 · HK 43 · RR 50CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key