1 HisKA#1
141-205 aa · 65 aa · 17.9% of protein
Raw token
HisKA:141:0.0000000000216:205:65:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G617_RS0103570
Histidine kinase, Classic
Dorea longicatena AGR2136 · GCF_000424345
ClassHKTypeClassicLength363 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424345#G617_RS0103570Stable P2CS identifier used across views.
GenomeGCF_000424345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length363 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 363 aa (47.7%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa363 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
252-359 aa · 108 aa · 29.8% of protein
Raw token
HATPase_c:252:2.91e-21:359:109:109- Raw architecture: HisKA:141:0.0000000000216:205:65:64#HATPase_c:252:2.91e-21:359:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424345::NZ_AUJS01000011.1::G00016
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span9132-10939Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424345::NZ_AUJS01000011.1::G00016Context members
G617_RS0103565G617_RS0103570
Partner locus tags
G617_RS0103565G617_RS0103570
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_044924393.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG617_RS0103570Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJS01000011.1Sequence record reported by the local genomic context database.
Genomic interval9 848-10 939 nt1 092 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span9 132-10 939 ntGCF_000424345::NZ_AUJS01000011.1::G00016
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424345::NZ_AUJS01000011.1::G00016Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJS01000011.1All displayed genes belong to this local TCS context.
Neighborhood span9 132-10 939 nt1 808 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
9 132 nt10 939 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G617_RS0103565GCF_000424345#G617_RS0103565
RROmpR
9 132-9 845 nt · Reverse (-)
G617_RS0103570GCF_000424345#G617_RS0103570
HKClassicCurrent focus
9 848-10 939 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424345#G617_RS0103570The current gene is the representative for this cluster.
PFAM architectureDUF4118 + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2730675
Simplified PFAM architecture for HKOC_2730675
PFAM domain coverage: 279 / 363 aa (76.9%)
1 aa363 aa
DUF4118HisKAHATPase_c
- Simplified architecture: DUF4118 + HisKA + HATPase_c
- Raw architecture: DUF4118[21-125] | HisKA[141-206] | HATPase_c[253-360]
- Domain count: 3
- Matched identifier: HKOC_2730675
- Positioned domains: DUF4118 21-125 ; HisKA 141-206 ; HATPase_c 253-360
Cluster members and taxonomy
Representative gene: GCF_000424345#G617_RS0103570
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 698 · GCF_000424345
AssemblyASM42434v1 · Scaffoldhaploid
Genome composition3 595 079 bp · 41,0% GCDorea longicatena AGR2136
Signal transduction countsGenes 96 · HK 43 · RR 50CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key