1 Response_reg#1
7-110 aa · 104 aa · 20.8% of protein
Raw token
Response_reg:7:6.21e-27:110:105:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G617_RS0102170
Response regulator RpfG family
Dorea longicatena AGR2136 · GCF_000424345
ClassRRTypeRpfGLength499 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424345#G617_RS0102170Stable P2CS identifier used across views.
GenomeGCF_000424345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHD
Protein length499 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 499 aa (41.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HDSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa499 aa
Domain-by-domain annotation2 items
2 HD#2
195-299 aa · 105 aa · 21.0% of protein
Raw token
HD:195:0.000000000000089:299:105:110- Raw architecture: Response_reg:7:6.21e-27:110:105:111#HD:195:0.000000000000089:299:105:110
- Domain description: 1 Response_reg,1 HD
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424345::NZ_AUJS01000004.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span20795-25435Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424345::NZ_AUJS01000004.1::G00010Context members
G617_RS18775G617_RS0102170
Partner locus tags
G617_RS18775G617_RS0102170
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_028086078.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG617_RS0102170Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJS01000004.1Sequence record reported by the local genomic context database.
Genomic interval23 936-25 435 nt1 500 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span20 795-25 435 ntGCF_000424345::NZ_AUJS01000004.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424345::NZ_AUJS01000004.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJS01000004.1All displayed genes belong to this local TCS context.
Neighborhood span20 795-25 435 nt4 641 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
20 795 nt25 435 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G617_RS18775GCF_000424345#G617_RS18775
HKHybrid
20 795-23 593 nt · Forward (+)
G617_RS0102170GCF_000424345#G617_RS0102170
RRRpfGCurrent focus
23 936-25 435 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424345#G617_RS0102170The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HD_52 domains in the representative PFAM annotation.
PFAM architecture for RROC_0159014
Simplified PFAM architecture for RROC_0159014
PFAM domain coverage: 253 / 499 aa (50.7%)
1 aa499 aa
Response_regHD_5
- Simplified architecture: Response_reg + HD_5
- Raw architecture: Response_reg[7-117] | HD_5[179-320]
- Domain count: 2
- Matched identifier: RROC_0159014
- Positioned domains: Response_reg 7-117 ; Response_reg 7-117 ; HD_5 179-320 ; HD_5 179-320
Cluster members and taxonomy
Representative gene: GCF_000424345#G617_RS0102170
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 698 · GCF_000424345
AssemblyASM42434v1 · Scaffoldhaploid
Genome composition3 595 079 bp · 41,0% GCDorea longicatena AGR2136
Signal transduction countsGenes 96 · HK 43 · RR 50CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key