1 HAMP#1
142-211 aa · 70 aa · 15.3% of protein
Raw token
HAMP:142:0.00000000000191:211:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G617_RS0102015
Histidine kinase, Classic
Dorea longicatena AGR2136 · GCF_000424345
ClassHKTypeClassicLength457 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424345#G617_RS0102015Stable P2CS identifier used across views.
GenomeGCF_000424345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length457 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage221 / 457 aa (48.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa457 aa
Domain-by-domain annotation3 items
2 HisKA#2
236-300 aa · 65 aa · 14.2% of protein
Raw token
HisKA:236:0.000000000186:300:65:643 HATPase_c#3
346-431 aa · 86 aa · 18.8% of protein
Raw token
HATPase_c:346:3.49e-18:431:90:109- Raw architecture: HAMP:142:0.00000000000191:211:70:69#HisKA:236:0.000000000186:300:65:64#HATPase_c:346:3.49e-18:431:90:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424345::NZ_AUJS01000003.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span95728-97762Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424345::NZ_AUJS01000003.1::G00009Context members
G617_RS0102015G617_RS0102020
Partner locus tags
G617_RS0102015G617_RS0102020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_242834579.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG617_RS0102015Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJS01000003.1Sequence record reported by the local genomic context database.
Genomic interval95 728-97 101 nt1 374 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span95 728-97 762 ntGCF_000424345::NZ_AUJS01000003.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424345::NZ_AUJS01000003.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJS01000003.1All displayed genes belong to this local TCS context.
Neighborhood span95 728-97 762 nt2 035 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
95 728 nt97 762 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G617_RS0102015GCF_000424345#G617_RS0102015
HKClassicCurrent focus
95 728-97 101 nt · Reverse (-)
G617_RS0102020GCF_000424345#G617_RS0102020
RROmpR
97 091-97 762 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424345#G617_RS0102015The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1874049
Simplified PFAM architecture for HKOC_1874049
PFAM domain coverage: 214 / 457 aa (46.8%)
1 aa457 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[162-210] | HisKA[237-300] | HATPase_c[347-447]
- Domain count: 3
- Matched identifier: HKOC_1874049
- Positioned domains: HAMP 162-210 ; HisKA 237-300 ; HATPase_c 347-447
Cluster members and taxonomy
Representative gene: GCF_000424345#G617_RS0102015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 698 · GCF_000424345
AssemblyASM42434v1 · Scaffoldhaploid
Genome composition3 595 079 bp · 41,0% GCDorea longicatena AGR2136
Signal transduction countsGenes 96 · HK 43 · RR 50CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key