1 HisKA#1
121-174 aa · 54 aa · 15.9% of protein
Raw token
HisKA:121:0.0000334:174:60:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G617_RS0100470
Histidine kinase, Classic
Dorea longicatena AGR2136 · GCF_000424345
ClassHKTypeClassicLength339 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424345#G617_RS0100470Stable P2CS identifier used across views.
GenomeGCF_000424345Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length339 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage168 / 339 aa (49.6%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa339 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
219-332 aa · 114 aa · 33.6% of protein
Raw token
HATPase_c:219:5.59e-22:332:114:109- Raw architecture: HisKA:121:0.0000334:174:60:64#HATPase_c:219:5.59e-22:332:114:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424345::NZ_AUJS01000001.1::G00003
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span93490-95192Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424345::NZ_AUJS01000001.1::G00003Context members
G617_RS0100470G617_RS0100475
Partner locus tags
G617_RS0100470G617_RS0100475
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_028085802.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG617_RS0100470Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJS01000001.1Sequence record reported by the local genomic context database.
Genomic interval93 490-94 509 nt1 020 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span93 490-95 192 ntGCF_000424345::NZ_AUJS01000001.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424345::NZ_AUJS01000001.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJS01000001.1All displayed genes belong to this local TCS context.
Neighborhood span93 490-95 192 nt1 703 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
93 490 nt95 192 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G617_RS0100470GCF_000424345#G617_RS0100470
HKClassicCurrent focus
93 490-94 509 nt · Reverse (-)
G617_RS0100475GCF_000424345#G617_RS0100475
RROmpR
94 506-95 192 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424345#G617_RS0100470The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2839705
Simplified PFAM architecture for HKOC_2839705
PFAM domain coverage: 113 / 339 aa (33.3%)
1 aa339 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[220-332]
- Domain count: 1
- Matched identifier: HKOC_2839705
- Positioned domains: HATPase_c 220-332
Cluster members and taxonomy
Representative gene: GCF_000424345#G617_RS0100470
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 698 · GCF_000424345
AssemblyASM42434v1 · Scaffoldhaploid
Genome composition3 595 079 bp · 41,0% GCDorea longicatena AGR2136
Signal transduction countsGenes 96 · HK 43 · RR 50CheA 0 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key