1 HAMP#1
154-223 aa · 70 aa · 15.4% of protein
Raw token
HAMP:154:0.000000000000776:223:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0102040
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0102040Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 455 aa (53.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
235-298 aa · 64 aa · 14.1% of protein
Raw token
HisKA:235:0.0000000000000165:298:64:643 HATPase_c#3
347-455 aa · 109 aa · 24.0% of protein
Raw token
HATPase_c:347:7.6e-19:455:115:109- Raw architecture: HAMP:154:0.000000000000776:223:70:69#HisKA:235:0.0000000000000165:298:64:64#HATPase_c:347:7.6e-19:455:115:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000002.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119269-121324Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000002.1::G00006Context members
G605_RS0102040G605_RS0102045
Partner locus tags
G605_RS0102040G605_RS0102045
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_027637652.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0102040Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000002.1Sequence record reported by the local genomic context database.
Genomic interval119 269-120 636 nt1 368 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span119 269-121 324 ntGCF_000424205::NZ_AUJL01000002.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000002.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000002.1All displayed genes belong to this local TCS context.
Neighborhood span119 269-121 324 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 269 nt121 324 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0102040GCF_000424205#G605_RS0102040
HKClassicCurrent focus
119 269-120 636 nt · Reverse (-)
G605_RS0102045GCF_000424205#G605_RS0102045
RROmpR
120 626-121 324 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0102040The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1900055
Simplified PFAM architecture for HKOC_1900055
PFAM domain coverage: 213 / 455 aa (46.8%)
1 aa455 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-223] | HisKA[235-298] | HATPase_c[347-449]
- Domain count: 3
- Matched identifier: HKOC_1900055
- Positioned domains: HAMP 178-223 ; HisKA 235-298 ; HATPase_c 347-449
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0102040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key