1 HAMP#1
191-260 aa · 70 aa · 14.4% of protein
Raw token
HAMP:191:0.00000000000296:260:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G605_RS0100490
Histidine kinase, Classic
Clostridium cadaveris AGR2141 · GCF_000424205
ClassHKTypeClassicLength486 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000424205#G605_RS0100490Stable P2CS identifier used across views.
GenomeGCF_000424205Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage244 / 486 aa (50.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
265-328 aa · 64 aa · 13.2% of protein
Raw token
HisKA:265:5.29e-21:328:64:643 HATPase_c#3
373-482 aa · 110 aa · 22.6% of protein
Raw token
HATPase_c:373:4.73e-28:482:110:109- Raw architecture: HAMP:191:0.00000000000296:260:70:69#HisKA:265:5.29e-21:328:64:64#HATPase_c:373:4.73e-28:482:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000424205::NZ_AUJL01000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span105509-107639Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000424205::NZ_AUJL01000001.1::G00001Context members
G605_RS0100490G605_RS0100495
Partner locus tags
G605_RS0100490G605_RS0100495
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_027637377.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG605_RS0100490Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AUJL01000001.1Sequence record reported by the local genomic context database.
Genomic interval105 509-106 969 nt1 461 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span105 509-107 639 ntGCF_000424205::NZ_AUJL01000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000424205::NZ_AUJL01000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AUJL01000001.1All displayed genes belong to this local TCS context.
Neighborhood span105 509-107 639 nt2 131 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
105 509 nt107 639 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G605_RS0100490GCF_000424205#G605_RS0100490
HKClassicCurrent focus
105 509-106 969 nt · Reverse (-)
G605_RS0100495GCF_000424205#G605_RS0100495
RROmpR
106 959-107 639 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0100490The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1567515
Simplified PFAM architecture for HKOC_1567515
PFAM domain coverage: 174 / 486 aa (35.8%)
1 aa486 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[265-328] | HATPase_c[374-483]
- Domain count: 2
- Matched identifier: HKOC_1567515
- Positioned domains: HisKA 265-328 ; HATPase_c 374-483
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0100490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 692 · GCF_000424205
AssemblyASM42420v1 · Scaffoldhaploid
Genome composition3 542 160 bp · 31,0% GCClostridium cadaveris AGR2141
Signal transduction countsGenes 80 · HK 39 · RR 40CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key