1 Response_reg#1
18-77 aa · 60 aa · 32.8% of protein
Raw token
Response_reg:18:0.00000000131:77:60:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G629_RS0104810
Response regulator NarL family
Bifidobacterium longum AGR2137 · GCF_000421385
ClassRRTypeNarLLength183 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000421385#G629_RS0104810Stable P2CS identifier used across views.
GenomeGCF_000421385Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length183 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage115 / 183 aa (62.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa183 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
120-174 aa · 55 aa · 30.1% of protein
Raw token
HTH_LUXR:120:9.49e-16:174:55:58- Raw architecture: Response_reg:18:0.00000000131:77:60:111#HTH_LUXR:120:9.49e-16:174:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000421385::NZ_ATWX01000007.1::G00010
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span102400-102951Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000421385::NZ_ATWX01000007.1::G00010Context members
G629_RS0104810
Partner locus tags
G629_RS0104810
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_268885712.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG629_RS0104810Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_ATWX01000007.1Sequence record reported by the local genomic context database.
Genomic interval102 400-102 951 nt552 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span102 400-102 951 ntGCF_000421385::NZ_ATWX01000007.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000421385::NZ_ATWX01000007.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_ATWX01000007.1All displayed genes belong to this local TCS context.
Neighborhood span102 400-102 951 nt552 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
102 400 nt102 951 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G629_RS0104810GCF_000421385#G629_RS0104810
RRNarLCurrent focus
102 400-102 951 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000421385#G629_RS0104810The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2181703
Simplified PFAM architecture for RROC_2181703
PFAM domain coverage: 118 / 183 aa (64.5%)
1 aa183 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[16-80] | GerE[122-174]
- Domain count: 2
- Matched identifier: RROC_2181703
- Positioned domains: Response_reg 16-80 ; Response_reg 16-80 ; GerE 122-174 ; GerE 122-174
Cluster members and taxonomy
Representative gene: GCF_000421385#G629_RS0104810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 280 702 · GCF_000421385
AssemblyASM42138v1 · Contighaploid
Genome composition2 270 377 bp · 60,0% GCBifidobacterium longum AGR2137
Signal transduction countsGenes 23 · HK 10 · RR 12CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key