1 HAMP#1
58-127 aa · 70 aa · 19.1% of protein
Raw token
HAMP:58:0.00000000000689:127:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICA_RS15300
Histidine kinase, Classic
Bacillus cereus BAG1O-3 · GCF_000412975
ClassHKTypeClassicLength366 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000412975#ICA_RS15300Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length366 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage240 / 366 aa (65.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa366 aa
Domain-by-domain annotation3 items
2 HisKA#2
138-199 aa · 62 aa · 16.9% of protein
Raw token
HisKA:138:0.000000000000408:199:62:643 HATPase_c#3
251-358 aa · 108 aa · 29.5% of protein
Raw token
HATPase_c:251:6.52e-22:358:109:109- Raw architecture: HAMP:58:0.00000000000689:127:70:69#HisKA:138:0.000000000000408:199:62:64#HATPase_c:251:6.52e-22:358:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000412975::NZ_KE332536.1::G00031
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3072134-3073898Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICA_03092RefSeq proteinWP_176524771.1
Context group ID
GCF_000412975::NZ_KE332536.1::G00031Context members
ICA_RS15300ICA_RS15305
Partner locus tags
ICA_RS15300ICA_RS15305
Partner old locus tags
ICA_03092ICA_03093
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_176524771.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICA_RS15300Primary locus identifier stored in the genes table.
Old locus tagICA_03092Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE332536.1Sequence record reported by the local genomic context database.
Genomic interval3 072 134-3 073 234 nt1 101 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 072 134-3 073 898 ntGCF_000412975::NZ_KE332536.1::G00031
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000412975::NZ_KE332536.1::G00031Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE332536.1All displayed genes belong to this local TCS context.
Neighborhood span3 072 134-3 073 898 nt1 765 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 072 134 nt3 073 898 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ICA_RS15300GCF_000412975#ICA_RS15300
HKClassicCurrent focus
3 072 134-3 073 234 nt · Reverse (-)
ICA_RS15305GCF_000412975#ICA_RS15305
RROmpR
3 073 200-3 073 898 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000412975#ICA_RS15300The current gene is the representative for this cluster.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2712270
Simplified PFAM architecture for HKOC_2712270
PFAM domain coverage: 225 / 366 aa (61.5%)
1 aa366 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[75-127] | HisKA[138-200] | HATPase_c[251-359]
- Domain count: 3
- Matched identifier: HKOC_2712270
- Positioned domains: HAMP 75-127 ; HisKA 138-200 ; HATPase_c 251-359
Cluster members and taxonomy
Representative gene: GCF_000412975#ICA_RS15300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 169 · GCF_000412975
AssemblyBaci_cere_BAG1O-3_G13160_V1 · Scaffoldhaploid
Genome composition5 851 194 bp · 35,0% GCBacillus cereus BAG1O-3
Signal transduction countsGenes 115 · HK 62 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key