1 Response_reg#1
6-116 aa · 111 aa · 52.1% of protein
Raw token
Response_reg:6:2.24e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
ICA_RS13215
Response regulator NarL family
Bacillus cereus BAG1O-3 · GCF_000412975
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000412975#ICA_RS13215Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 213 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 25.8% of protein
Raw token
HTH_LUXR:151:2.28e-24:205:55:58- Raw architecture: Response_reg:6:2.24e-37:116:111:111#HTH_LUXR:151:2.28e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000412975::NZ_KE332536.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2653728-2655481Genomic interval covered by the local TCS group.
Identifiers
Old locus tagICA_02676RefSeq proteinWP_000694630.1
Context group ID
GCF_000412975::NZ_KE332536.1::G00028Context members
ICA_RS13215ICA_RS13220
Partner locus tags
ICA_RS13215ICA_RS13220
Partner old locus tags
ICA_02676ICA_02677
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000694630.1Primary protein accession used for annex mappings.
UniProt accessionA0AAN4KRB0Primary UniProt accession resolved in the annex database.
UniProt IDA0AAN4KRB0_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagICA_RS13215Primary locus identifier stored in the genes table.
Old locus tagICA_02676Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE332536.1Sequence record reported by the local genomic context database.
Genomic interval2 653 728-2 654 369 nt642 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 653 728-2 655 481 ntGCF_000412975::NZ_KE332536.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000412975::NZ_KE332536.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE332536.1All displayed genes belong to this local TCS context.
Neighborhood span2 653 728-2 655 481 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 653 728 nt2 655 481 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
ICA_RS13215GCF_000412975#ICA_RS13215
RRNarLCurrent focus
2 653 728-2 654 369 nt · Reverse (-)
ICA_RS13220GCF_000412975#ICA_RS13220
HKClassic
2 654 384-2 655 481 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000161495#BTHUR0002_RS10575Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1962723
Simplified PFAM architecture for RROC_1962723
PFAM domain coverage: 167 / 213 aa (78.4%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_1962723
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_000161495#BTHUR0002_RS10575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 169 · GCF_000412975
AssemblyBaci_cere_BAG1O-3_G13160_V1 · Scaffoldhaploid
Genome composition5 851 194 bp · 35,0% GCBacillus cereus BAG1O-3
Signal transduction countsGenes 115 · HK 62 · RR 53CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key