1 Response_reg#1
4-68 aa · 65 aa · 95.6% of protein
Raw token
Response_reg:4:0.0000000000974:68:65:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1482_RS11020
Response regulator, CheY family
Bifidobacterium breve HPH0326 · GCF_000411435
ClassRRTypeCheYLength68 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000411435#HMPREF1482_RS11020Stable P2CS identifier used across views.
GenomeGCF_000411435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length68 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage65 / 68 aa (95.6%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa68 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:0.0000000000974:68:65:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000411435::NZ_KE150453.1::G00003
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span843690-843896Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1482_00717RefSeq proteinWP_196228190.1
Context group ID
GCF_000411435::NZ_KE150453.1::G00003Context members
HMPREF1482_RS11020
Partner locus tags
HMPREF1482_RS11020
Partner old locus tags
HMPREF1482_00717
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_196228190.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1482_RS11020Primary locus identifier stored in the genes table.
Old locus tagHMPREF1482_00717Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE150453.1Sequence record reported by the local genomic context database.
Genomic interval843 690-843 896 nt207 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span843 690-843 896 ntGCF_000411435::NZ_KE150453.1::G00003
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000411435::NZ_KE150453.1::G00003Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE150453.1All displayed genes belong to this local TCS context.
Neighborhood span843 690-843 896 nt207 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
843 690 nt843 896 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HMPREF1482_RS11020GCF_000411435#HMPREF1482_RS11020
RRCheYCurrent focus
843 690-843 896 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001264105#BBM1340_RS05380Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2209252
Simplified PFAM architecture for RROC_2209252
PFAM domain coverage: 110 / 159 aa (69.2%)
1 aa159 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[4-113]
- Domain count: 1
- Matched identifier: RROC_2209252
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113
Cluster members and taxonomy
Representative gene: GCF_001264105#BBM1340_RS05380
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 203 540 · GCF_000411435
AssemblyBifi_brev_HPH0326_V1 · Scaffoldhaploid
Genome composition2 504 312 bp · 59,0% GCBifidobacterium breve HPH0326
Signal transduction countsGenes 22 · HK 8 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key