1 HAMP#1
252-320 aa · 69 aa · 10.8% of protein
Raw token
HAMP:252:8.69e-16:320:69:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HMPREF1482_RS06160
Histidine kinase, Classic
Bifidobacterium breve HPH0326 · GCF_000411435
ClassHKTypeClassicLength641 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000411435#HMPREF1482_RS06160Stable P2CS identifier used across views.
GenomeGCF_000411435Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length641 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 641 aa (44.8%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa641 aa
Domain-by-domain annotation3 items
2 HisKA#2
332-401 aa · 70 aa · 10.9% of protein
Raw token
HisKA:332:7.25e-18:401:70:643 HATPase_c#3
465-612 aa · 148 aa · 23.1% of protein
Raw token
HATPase_c:465:5.6e-21:612:148:109- Raw architecture: HAMP:252:8.69e-16:320:69:69#HisKA:332:7.25e-18:401:70:64#HATPase_c:465:5.6e-21:612:148:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000411435::NZ_KE150454.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span81102-83835Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHMPREF1482_00860RefSeq proteinWP_014483538.1
Context group ID
GCF_000411435::NZ_KE150454.1::G00005Context members
HMPREF1482_RS06160HMPREF1482_RS06155
Partner locus tags
HMPREF1482_RS06160HMPREF1482_RS06155
Partner old locus tags
HMPREF1482_00860HMPREF1482_00861
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_014483538.1Primary protein accession used for annex mappings.
UniProt accessionA0A2K9B346Primary UniProt accession resolved in the annex database.
UniProt IDA0A2K9B346_BIFBRDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHMPREF1482_RS06160Primary locus identifier stored in the genes table.
Old locus tagHMPREF1482_00860Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KE150454.1Sequence record reported by the local genomic context database.
Genomic interval81 102-83 027 nt1 926 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 102-83 835 ntGCF_000411435::NZ_KE150454.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000411435::NZ_KE150454.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE150454.1All displayed genes belong to this local TCS context.
Neighborhood span81 102-83 835 nt2 734 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 102 nt83 835 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HMPREF1482_RS06160GCF_000411435#HMPREF1482_RS06160
HKClassicCurrent focus
81 102-83 027 nt · Reverse (-)
HMPREF1482_RS06155GCF_000411435#HMPREF1482_RS06155
RROmpR
83 104-83 835 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000213865#HMPREF9228_RS02465Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0918279
Simplified PFAM architecture for HKOC_0918279
PFAM domain coverage: 268 / 641 aa (41.8%)
1 aa641 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[269-320] | HisKA[333-401] | HATPase_c[465-611]
- Domain count: 3
- Matched identifier: HKOC_0918279
- Positioned domains: HAMP 269-320 ; HisKA 333-401 ; HATPase_c 465-611
Cluster members and taxonomy
Representative gene: GCF_000213865#HMPREF9228_RS02465
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 203 540 · GCF_000411435
AssemblyBifi_brev_HPH0326_V1 · Scaffoldhaploid
Genome composition2 504 312 bp · 59,0% GCBifidobacterium breve HPH0326
Signal transduction countsGenes 22 · HK 8 · RR 13CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key