1 HisKA_3#1
211-274 aa · 64 aa · 14.3% of protein
Raw token
HisKA_3:211:0.00000000000000871:274:64:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
F778_RS0102145
Histidine kinase, Classic
Bifidobacterium longum subsp. longum CMCC P0001 · GCF_000410595
ClassHKTypeClassicLength446 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000410595#F778_RS0102145Stable P2CS identifier used across views.
GenomeGCF_000410595Bacteria; Bacillati; Actinomycetota; Actinomycetes; Bifidobacteriales; Bifidobacteriaceae; Bifidobacterium
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length446 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 446 aa (41.0%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 HATPase_c#2
321-439 aa · 119 aa · 26.7% of protein
Raw token
HATPase_c:321:0.0000000971:439:120:109- Raw architecture: HisKA_3:211:0.00000000000000871:274:64:68#HATPase_c:321:0.0000000971:439:120:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000410595::NZ_KE145394.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span63839-65832Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000410595::NZ_KE145394.1::G00005Context members
F778_RS0102145F778_RS0102150
Partner locus tags
F778_RS0102145F778_RS0102150
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_013140609.1Primary protein accession used for annex mappings.
UniProt accessionD6ZTU6Primary UniProt accession resolved in the annex database.
UniProt IDD6ZTU6_BIFLJDisplay identifier provided by UniProt.
GO / PubMed4 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagF778_RS0102145Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_KE145394.1Sequence record reported by the local genomic context database.
Genomic interval63 839-65 179 nt1 341 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span63 839-65 832 ntGCF_000410595::NZ_KE145394.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000410595::NZ_KE145394.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KE145394.1All displayed genes belong to this local TCS context.
Neighborhood span63 839-65 832 nt1 994 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
63 839 nt65 832 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
F778_RS0102145GCF_000410595#F778_RS0102145
HKClassicCurrent focus
63 839-65 179 nt · Forward (+)
F778_RS0102150GCF_000410595#F778_RS0102150
RRNarL
65 179-65 832 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000092325#BLJ_RS04215Use this link to inspect the representative gene detail.
PFAM architectureHisKA_31 domain in the representative PFAM annotation.
PFAM architecture for HKOC_2010491
Simplified PFAM architecture for HKOC_2010491
PFAM domain coverage: 66 / 446 aa (14.8%)
1 aa446 aa
HisKA_3
- Simplified architecture: HisKA_3
- Raw architecture: HisKA_3[211-276]
- Domain count: 1
- Matched identifier: HKOC_2010491
- Positioned domains: HisKA_3 211-276
Cluster members and taxonomy
Representative gene: GCF_000092325#BLJ_RS04215
Displayed with 5 columns and 10 rows per page from the local display config.
Showing members 1 to 5 over 5 total members. Page 1 / 1.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 266 716 · GCF_000410595
AssemblyASM41059v1 · Scaffoldhaploid
Genome composition2 424 349 bp · 60,0% GCBifidobacterium longum subsp. longum CMCC P0001
Signal transduction countsGenes 26 · HK 11 · RR 14CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumActinomycetotaClassActinomycetesOrderBifidobacterialesFamilyBifidobacteriaceaeGenusBifidobacterium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Actinomycetota4Actinomycetes5Bifidobacteriales6Bifidobacteriaceae7Bifidobacterium
Related genes
Preview from the same derived genome key