1 Response_reg#1
3-112 aa · 110 aa · 49.3% of protein
Raw token
Response_reg:3:5.18e-41:112:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IK1_RS25335
Response regulator OmpR family
Bacillus cereus VD146 · GCF_000399425
ClassRRTypeOmpRLength223 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399425#IK1_RS25335Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length223 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 223 aa (82.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa223 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 33.2% of protein
Raw token
Trans_reg_C:148:1.96e-28:221:77:77- Raw architecture: Response_reg:3:5.18e-41:112:111:111#Trans_reg_C:148:1.96e-28:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399425::NZ_KB976678.1::G00060
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span323793-325906Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIK1_04925RefSeq proteinWP_016121082.1
Context group ID
GCF_000399425::NZ_KB976678.1::G00060Context members
IK1_RS25330IK1_RS25335
Partner locus tags
IK1_RS25330IK1_RS25335
Partner old locus tags
IK1_04924IK1_04925
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016121082.1Primary protein accession used for annex mappings.
UniProt accessionR8MJ51Primary UniProt accession resolved in the annex database.
UniProt IDR8MJ51_BACCXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIK1_RS25335Primary locus identifier stored in the genes table.
Old locus tagIK1_04925Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976678.1Sequence record reported by the local genomic context database.
Genomic interval325 235-325 906 nt672 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span323 793-325 906 ntGCF_000399425::NZ_KB976678.1::G00060
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399425::NZ_KB976678.1::G00060Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976678.1All displayed genes belong to this local TCS context.
Neighborhood span323 793-325 906 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
323 793 nt325 906 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IK1_RS25330GCF_000399425#IK1_RS25330
HKClassic
323 793-325 223 nt · Reverse (-)
IK1_RS25335GCF_000399425#IK1_RS25335
RROmpRCurrent focus
325 235-325 906 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399425#IK1_RS25335The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1589457
Simplified PFAM architecture for RROC_1589457
PFAM domain coverage: 183 / 223 aa (82.1%)
1 aa223 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-111] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1589457
- Positioned domains: Response_reg 3-111 ; Response_reg 3-111 ; Trans_reg_C 148-221 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_000399425#IK1_RS25335
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 236 · GCF_000399425
AssemblyBaci_cere_VD146_V1 · Scaffoldhaploid
Genome composition6 109 375 bp · 35,0% GCBacillus cereus VD146
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key