1 HisKA#1
85-152 aa · 68 aa · 21.9% of protein
Raw token
HisKA:85:0.0000000000000138:152:68:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IK1_RS21895
Histidine kinase, Classic
Bacillus cereus VD146 · GCF_000399425
ClassHKTypeClassicLength311 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399425#IK1_RS21895Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length311 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage177 / 311 aa (56.9%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa311 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
198-306 aa · 109 aa · 35.0% of protein
Raw token
HATPase_c:198:3.23e-26:306:109:109- Raw architecture: HisKA:85:0.0000000000000138:152:68:64#HATPase_c:198:3.23e-26:306:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399425::NZ_KB976677.1::G00051
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span3552066-3553695Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIK1_03688RefSeq proteinWP_016120865.1
Context group ID
GCF_000399425::NZ_KB976677.1::G00051Context members
IK1_RS21895IK1_RS21900
Partner locus tags
IK1_RS21895IK1_RS21900
Partner old locus tags
IK1_03688IK1_03689
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016120865.1Primary protein accession used for annex mappings.
UniProt accessionR8MMN7Primary UniProt accession resolved in the annex database.
UniProt IDR8MMN7_BACCXDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIK1_RS21895Primary locus identifier stored in the genes table.
Old locus tagIK1_03688Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976677.1Sequence record reported by the local genomic context database.
Genomic interval3 552 066-3 553 001 nt936 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span3 552 066-3 553 695 ntGCF_000399425::NZ_KB976677.1::G00051
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399425::NZ_KB976677.1::G00051Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976677.1All displayed genes belong to this local TCS context.
Neighborhood span3 552 066-3 553 695 nt1 630 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
3 552 066 nt3 553 695 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IK1_RS21895GCF_000399425#IK1_RS21895
HKClassicCurrent focus
3 552 066-3 553 001 nt · Reverse (-)
IK1_RS21900GCF_000399425#IK1_RS21900
RROmpR
3 553 003-3 553 695 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399425#IK1_RS21895The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2876502
Simplified PFAM architecture for HKOC_2876502
PFAM domain coverage: 173 / 311 aa (55.6%)
1 aa311 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[86-152] | HATPase_c[201-306]
- Domain count: 2
- Matched identifier: HKOC_2876502
- Positioned domains: HisKA 86-152 ; HATPase_c 201-306
Cluster members and taxonomy
Representative gene: GCF_000399425#IK1_RS21895
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 236 · GCF_000399425
AssemblyBaci_cere_VD146_V1 · Scaffoldhaploid
Genome composition6 109 375 bp · 35,0% GCBacillus cereus VD146
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key