1 HisKA_3#1
502-562 aa · 61 aa · 8.6% of protein
Raw token
HisKA_3:502:0.00000226:562:65:68P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IK1_RS15535
Histidine kinase, Classic
Bacillus cereus VD146 · GCF_000399425
ClassHKTypeClassicLength713 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399425#IK1_RS15535Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HisKA_3HATPase_c
Protein length713 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage156 / 713 aa (21.9%)Merged over positioned domains only.
Domain description1 HisKA_3,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa713 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
605-699 aa · 95 aa · 13.3% of protein
Raw token
HATPase_c:605:2.54e-20:699:105:109- Raw architecture: HisKA_3:502:0.00000226:562:65:68#HATPase_c:605:2.54e-20:699:105:109
- Domain description: 1 HisKA_3,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399425::NZ_KB976677.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2306015-2308736Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIK1_02397RefSeq proteinWP_016120519.1
Context group ID
GCF_000399425::NZ_KB976677.1::G00042Context members
IK1_RS15535IK1_RS15540
Partner locus tags
IK1_RS15535IK1_RS15540
Partner old locus tags
IK1_02397IK1_02398
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016120519.1Primary protein accession used for annex mappings.
UniProt accessionR8MWU3Primary UniProt accession resolved in the annex database.
UniProt IDR8MWU3_BACCXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIK1_RS15535Primary locus identifier stored in the genes table.
Old locus tagIK1_02397Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976677.1Sequence record reported by the local genomic context database.
Genomic interval2 306 015-2 308 156 nt2 142 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span2 306 015-2 308 736 ntGCF_000399425::NZ_KB976677.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399425::NZ_KB976677.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976677.1All displayed genes belong to this local TCS context.
Neighborhood span2 306 015-2 308 736 nt2 722 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 306 015 nt2 308 736 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IK1_RS15535GCF_000399425#IK1_RS15535
HKClassicCurrent focus
2 306 015-2 308 156 nt · Forward (+)
IK1_RS15540GCF_000399425#IK1_RS15540
RRNarL
2 308 128-2 308 736 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399425#IK1_RS15535The current gene is the representative for this cluster.
PFAM architectureHATPase_c1 domain in the representative PFAM annotation.
PFAM architecture for HKOC_0745516
Simplified PFAM architecture for HKOC_0745516
PFAM domain coverage: 95 / 713 aa (13.3%)
1 aa713 aa
HATPase_c
- Simplified architecture: HATPase_c
- Raw architecture: HATPase_c[605-699]
- Domain count: 1
- Matched identifier: HKOC_0745516
- Positioned domains: HATPase_c 605-699
Cluster members and taxonomy
Representative gene: GCF_000399425#IK1_RS15535
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 236 · GCF_000399425
AssemblyBaci_cere_VD146_V1 · Scaffoldhaploid
Genome composition6 109 375 bp · 35,0% GCBacillus cereus VD146
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key