1 HAMP#1
55-122 aa · 68 aa · 20.5% of protein
Raw token
HAMP:55:0.000000216:122:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IK1_RS14625
Histidine kinase, Classic
Bacillus cereus VD146 · GCF_000399425
ClassHKTypeClassicLength331 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399425#IK1_RS14625Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length331 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage204 / 331 aa (61.6%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa331 aa
Domain-by-domain annotation3 items
2 HisKA#2
137-190 aa · 54 aa · 16.3% of protein
Raw token
HisKA:137:0.0000000286:190:54:643 HATPase_c#3
246-327 aa · 82 aa · 24.8% of protein
Raw token
HATPase_c:246:0.000000000186:327:103:109- Raw architecture: HAMP:55:0.000000216:122:71:69#HisKA:137:0.0000000286:190:54:64#HATPase_c:246:0.000000000186:327:103:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399425::NZ_KB976677.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2128237-2129900Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIK1_02209RefSeq proteinWP_016120443.1
Context group ID
GCF_000399425::NZ_KB976677.1::G00037Context members
IK1_RS14625IK1_RS14630
Partner locus tags
IK1_RS14625IK1_RS14630
Partner old locus tags
IK1_02209IK1_02210
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016120443.1Primary protein accession used for annex mappings.
UniProt accessionR8MYN7Primary UniProt accession resolved in the annex database.
UniProt IDR8MYN7_BACCXDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIK1_RS14625Primary locus identifier stored in the genes table.
Old locus tagIK1_02209Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976677.1Sequence record reported by the local genomic context database.
Genomic interval2 128 237-2 129 232 nt996 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 128 237-2 129 900 ntGCF_000399425::NZ_KB976677.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399425::NZ_KB976677.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976677.1All displayed genes belong to this local TCS context.
Neighborhood span2 128 237-2 129 900 nt1 664 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 128 237 nt2 129 900 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IK1_RS14625GCF_000399425#IK1_RS14625
HKClassicCurrent focus
2 128 237-2 129 232 nt · Reverse (-)
IK1_RS14630GCF_000399425#IK1_RS14630
RROmpR
2 129 229-2 129 900 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399425#IK1_RS14625The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2855083
Simplified PFAM architecture for HKOC_2855083
PFAM domain coverage: 134 / 331 aa (40.5%)
1 aa331 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[137-190] | HATPase_c[247-326]
- Domain count: 2
- Matched identifier: HKOC_2855083
- Positioned domains: HisKA 137-190 ; HATPase_c 247-326
Cluster members and taxonomy
Representative gene: GCF_000399425#IK1_RS14625
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 236 · GCF_000399425
AssemblyBaci_cere_VD146_V1 · Scaffoldhaploid
Genome composition6 109 375 bp · 35,0% GCBacillus cereus VD146
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key