1 Response_reg#1
5-115 aa · 111 aa · 35.8% of protein
Raw token
Response_reg:5:1.13e-20:115:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IK1_RS08810
Response regulator, unclassified
Bacillus cereus VD146 · GCF_000399425
ClassRRTypeunclassifiedLength310 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000399425#IK1_RS08810Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regYcbB
Protein length310 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage252 / 310 aa (81.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 YcbBSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa310 aa
Domain-by-domain annotation2 items
2 YcbB#2
159-299 aa · 141 aa · 45.5% of protein
Raw token
YcbB:159:1.07e-61:299:141:131- Raw architecture: Response_reg:5:1.13e-20:115:113:111#YcbB:159:1.07e-61:299:141:131
- Domain description: 1 Response_reg,1 YcbB
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000399425::NZ_KB976677.1::G00022
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span962006-962938Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIK1_01029RefSeq proteinWP_016119989.1
Context group ID
GCF_000399425::NZ_KB976677.1::G00022Context members
IK1_RS08810
Partner locus tags
IK1_RS08810
Partner old locus tags
IK1_01029
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016119989.1Primary protein accession used for annex mappings.
UniProt accessionR8N6G1Primary UniProt accession resolved in the annex database.
UniProt IDR8N6G1_BACCXDisplay identifier provided by UniProt.
GO / PubMed1 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIK1_RS08810Primary locus identifier stored in the genes table.
Old locus tagIK1_01029Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976677.1Sequence record reported by the local genomic context database.
Genomic interval962 006-962 938 nt933 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span962 006-962 938 ntGCF_000399425::NZ_KB976677.1::G00022
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399425::NZ_KB976677.1::G00022Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976677.1All displayed genes belong to this local TCS context.
Neighborhood span962 006-962 938 nt933 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
962 006 nt962 938 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
IK1_RS08810GCF_000399425#IK1_RS08810
RRunclassifiedCurrent focus
962 006-962 938 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399425#IK1_RS08810The current gene is the representative for this cluster.
PFAM architectureResponse_reg + YcbB2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0552072
Simplified PFAM architecture for RROC_0552072
PFAM domain coverage: 249 / 310 aa (80.3%)
1 aa310 aa
Response_regYcbB
- Simplified architecture: Response_reg + YcbB
- Raw architecture: Response_reg[5-114] | YcbB[161-299]
- Domain count: 2
- Matched identifier: RROC_0552072
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; YcbB 161-299 ; YcbB 161-299
Cluster members and taxonomy
Representative gene: GCF_000399425#IK1_RS08810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 236 · GCF_000399425
AssemblyBaci_cere_VD146_V1 · Scaffoldhaploid
Genome composition6 109 375 bp · 35,0% GCBacillus cereus VD146
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key