1 Response_reg#1
5-114 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:5:1.75e-41:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IK1_RS01795
Response regulator OmpR family
Bacillus cereus VD146 · GCF_000399425
ClassRRTypeOmpRLength237 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399425#IK1_RS01795Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 237 aa (78.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-229 aa · 76 aa · 32.1% of protein
Raw token
Trans_reg_C:154:9.66e-32:229:76:77- Raw architecture: Response_reg:5:1.75e-41:114:111:111#Trans_reg_C:154:9.66e-32:229:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399425::NZ_KB976675.1::G00005
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span273428-275217Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIK1_04288RefSeq proteinWP_043331234.1
Context group ID
GCF_000399425::NZ_KB976675.1::G00005Context members
IK1_RS01795IK1_RS01800
Partner locus tags
IK1_RS01795IK1_RS01800
Partner old locus tags
IK1_04288IK1_04289
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_043331234.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIK1_RS01795Primary locus identifier stored in the genes table.
Old locus tagIK1_04288Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976675.1Sequence record reported by the local genomic context database.
Genomic interval273 428-274 141 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span273 428-275 217 ntGCF_000399425::NZ_KB976675.1::G00005
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399425::NZ_KB976675.1::G00005Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976675.1All displayed genes belong to this local TCS context.
Neighborhood span273 428-275 217 nt1 790 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
273 428 nt275 217 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IK1_RS01795GCF_000399425#IK1_RS01795
RROmpRCurrent focus
273 428-274 141 nt · Forward (+)
IK1_RS01800GCF_000399425#IK1_RS01800
HKClassic
274 138-275 217 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000399425#IK1_RS01795The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0962661
Simplified PFAM architecture for RROC_0962661
PFAM domain coverage: 185 / 237 aa (78.1%)
1 aa237 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-229]
- Domain count: 2
- Matched identifier: RROC_0962661
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-229 ; Trans_reg_C 154-229
Cluster members and taxonomy
Representative gene: GCF_000399425#IK1_RS01795
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 053 236 · GCF_000399425
AssemblyBaci_cere_VD146_V1 · Scaffoldhaploid
Genome composition6 109 375 bp · 35,0% GCBacillus cereus VD146
Signal transduction countsGenes 129 · HK 69 · RR 60CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key