1 HAMP#1
205-269 aa · 65 aa · 12.9% of protein
Raw token
HAMP:205:0.00000000656:269:65:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKK_RS22760
Histidine kinase, Classic
Bacillus mycoides · GCF_000399045
ClassHKTypeClassicLength502 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399045#IKK_RS22760Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length502 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 502 aa (48.0%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation3 items
2 HisKA#2
280-347 aa · 68 aa · 13.5% of protein
Raw token
HisKA:280:0.00000000000000845:347:68:643 HATPase_c#3
394-501 aa · 108 aa · 21.5% of protein
Raw token
HATPase_c:394:4.73e-21:501:109:109- Raw architecture: HAMP:205:0.00000000656:269:65:69#HisKA:280:0.00000000000000845:347:68:64#HATPase_c:394:4.73e-21:501:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399045::NZ_KB976196.1::G00064
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4518707-4520900Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKK_04607RefSeq proteinWP_016127568.1
Context group ID
GCF_000399045::NZ_KB976196.1::G00064Context members
IKK_RS22760IKK_RS22765
Partner locus tags
IKK_RS22760IKK_RS22765
Partner old locus tags
IKK_04607IKK_04608
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016127568.1Primary protein accession used for annex mappings.
UniProt accessionA0AAP8H1H2Primary UniProt accession resolved in the annex database.
UniProt IDA0AAP8H1H2_BACMYDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKK_RS22760Primary locus identifier stored in the genes table.
Old locus tagIKK_04607Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976196.1Sequence record reported by the local genomic context database.
Genomic interval4 518 707-4 520 215 nt1 509 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 518 707-4 520 900 ntGCF_000399045::NZ_KB976196.1::G00064
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399045::NZ_KB976196.1::G00064Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976196.1All displayed genes belong to this local TCS context.
Neighborhood span4 518 707-4 520 900 nt2 194 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 518 707 nt4 520 900 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKK_RS22760GCF_000399045#IKK_RS22760
HKClassicCurrent focus
4 518 707-4 520 215 nt · Reverse (-)
IKK_RS22765GCF_000399045#IKK_RS22765
RROmpR
4 520 199-4 520 900 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS21660Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1463868
Simplified PFAM architecture for HKOC_1463868
PFAM domain coverage: 218 / 502 aa (43.4%)
1 aa502 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[225-268] | HisKA[280-346] | HATPase_c[394-500]
- Domain count: 3
- Matched identifier: HKOC_1463868
- Positioned domains: HAMP 225-268 ; HisKA 280-346 ; HATPase_c 394-500
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS21660
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000399045
AssemblyBaci_cere_VDM019_V1 · Scaffoldhaploid
Genome composition6 008 443 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 69 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key