1 Response_reg#1
5-114 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:5:3.82e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IKK_RS22670
Response regulator OmpR family
Bacillus mycoides · GCF_000399045
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000399045#IKK_RS22670Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 229 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-225 aa · 71 aa · 31.0% of protein
Raw token
Trans_reg_C:155:6.43e-29:225:74:77- Raw architecture: Response_reg:5:3.82e-35:114:111:111#Trans_reg_C:155:6.43e-29:225:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000399045::NZ_KB976196.1::G00063
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4501148-4503687Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIKK_04588RefSeq proteinWP_000041840.1
Context group ID
GCF_000399045::NZ_KB976196.1::G00063Context members
IKK_RS22665IKK_RS22670
Partner locus tags
IKK_RS22665IKK_RS22670
Partner old locus tags
IKK_04587IKK_04588
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_000041840.1Primary protein accession used for annex mappings.
UniProt accessionA0A150C5P1Primary UniProt accession resolved in the annex database.
UniProt IDA0A150C5P1_BACCEDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIKK_RS22670Primary locus identifier stored in the genes table.
Old locus tagIKK_04588Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976196.1Sequence record reported by the local genomic context database.
Genomic interval4 502 998-4 503 687 nt690 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span4 501 148-4 503 687 ntGCF_000399045::NZ_KB976196.1::G00063
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000399045::NZ_KB976196.1::G00063Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976196.1All displayed genes belong to this local TCS context.
Neighborhood span4 501 148-4 503 687 nt2 540 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 501 148 nt4 503 687 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IKK_RS22665GCF_000399045#IKK_RS22665
HKClassic
4 501 148-4 503 001 nt · Reverse (-)
IKK_RS22670GCF_000399045#IKK_RS22670
RROmpRCurrent focus
4 502 998-4 503 687 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000003925#BMYCO0001_RS21750Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246100
Simplified PFAM architecture for RROC_1246100
PFAM domain coverage: 181 / 229 aa (79.0%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-225]
- Domain count: 2
- Matched identifier: RROC_1246100
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 154-225 ; Trans_reg_C 154-225
Cluster members and taxonomy
Representative gene: GCF_000003925#BMYCO0001_RS21750
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 405 · GCF_000399045
AssemblyBaci_cere_VDM019_V1 · Scaffoldhaploid
Genome composition6 008 443 bp · 35,0% GCBacillus mycoides
Signal transduction countsGenes 130 · HK 69 · RR 61CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key