1 Response_reg#1
6-116 aa · 111 aa · 52.1% of protein
Raw token
Response_reg:6:7.65e-38:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IAW_RS13680
Response regulator NarL family
Bacillus cereus str. Schrouff · GCF_000398945
ClassRRTypeNarLLength213 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000398945#IAW_RS13680Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length213 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage166 / 213 aa (77.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa213 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
151-205 aa · 55 aa · 25.8% of protein
Raw token
HTH_LUXR:151:1.64e-24:205:55:58- Raw architecture: Response_reg:6:7.65e-38:116:111:111#HTH_LUXR:151:1.64e-24:205:55:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000398945::NZ_KB976107.1::G00028
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span2712430-2714183Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIAW_02771RefSeq proteinWP_016077777.1
Context group ID
GCF_000398945::NZ_KB976107.1::G00028Context members
IAW_RS13680IAW_RS13685
Partner locus tags
IAW_RS13680IAW_RS13685
Partner old locus tags
IAW_02771IAW_02772
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_016077777.1Primary protein accession used for annex mappings.
UniProt accessionA0A9X6V610Primary UniProt accession resolved in the annex database.
UniProt IDA0A9X6V610_BACTUDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIAW_RS13680Primary locus identifier stored in the genes table.
Old locus tagIAW_02771Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976107.1Sequence record reported by the local genomic context database.
Genomic interval2 712 430-2 713 071 nt642 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 712 430-2 714 183 ntGCF_000398945::NZ_KB976107.1::G00028
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000398945::NZ_KB976107.1::G00028Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976107.1All displayed genes belong to this local TCS context.
Neighborhood span2 712 430-2 714 183 nt1 754 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 712 430 nt2 714 183 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IAW_RS13680GCF_000398945#IAW_RS13680
RRNarLCurrent focus
2 712 430-2 713 071 nt · Reverse (-)
IAW_RS13685GCF_000398945#IAW_RS13685
HKClassic
2 713 086-2 714 183 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000398945#IAW_RS13680The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1963525
Simplified PFAM architecture for RROC_1963525
PFAM domain coverage: 167 / 213 aa (78.4%)
1 aa213 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[6-116] | GerE[150-205]
- Domain count: 2
- Matched identifier: RROC_1963525
- Positioned domains: Response_reg 6-116 ; Response_reg 6-116 ; GerE 150-205 ; GerE 150-205
Cluster members and taxonomy
Representative gene: GCF_000398945#IAW_RS13680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 718 221 · GCF_000398945
AssemblyBaci_cere_Schrouff_V2 · Scaffoldhaploid
Genome composition6 267 079 bp · 35,0% GCBacillus cereus str. Schrouff
Signal transduction countsGenes 114 · HK 62 · RR 52CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key