1 HAMP#1
306-373 aa · 68 aa · 11.1% of protein
Raw token
HAMP:306:0.000000000000993:373:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
IAY_RS09025
Histidine kinase, Classic
Bacillus cereus TIAC219 · GCF_000398785
ClassHKTypeClassicLength614 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000398785#IAY_RS09025Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length614 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 614 aa (39.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa614 aa
Domain-by-domain annotation3 items
2 HisKA#2
393-457 aa · 65 aa · 10.6% of protein
Raw token
HisKA:393:2.29e-16:457:65:643 HATPase_c#3
501-608 aa · 108 aa · 17.6% of protein
Raw token
HATPase_c:501:7.34e-20:608:109:109- Raw architecture: HAMP:306:0.000000000000993:373:68:69#HisKA:393:2.29e-16:457:65:64#HATPase_c:501:7.34e-20:608:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000398785::NZ_KB976010.1::G00013
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span5074-7598Genomic interval covered by the local TCS group.
Identifiers
Old locus tagIAY_06828RefSeq proteinWP_001227606.1
Context group ID
GCF_000398785::NZ_KB976010.1::G00013Context members
IAY_RS09020IAY_RS09025
Partner locus tags
IAY_RS09020IAY_RS09025
Partner old locus tags
IAY_06827IAY_06828
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_001227606.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagIAY_RS09025Primary locus identifier stored in the genes table.
Old locus tagIAY_06828Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB976010.1Sequence record reported by the local genomic context database.
Genomic interval5 754-7 598 nt1 845 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span5 074-7 598 ntGCF_000398785::NZ_KB976010.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000398785::NZ_KB976010.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB976010.1All displayed genes belong to this local TCS context.
Neighborhood span5 074-7 598 nt2 525 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
5 074 nt7 598 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
IAY_RS09020GCF_000398785#IAY_RS09020
RROmpR
5 074-5 754 nt · Forward (+)
IAY_RS09025GCF_000398785#IAY_RS09025
HKClassicCurrent focus
5 754-7 598 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000290955#IC1_RS31065Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0991202
Simplified PFAM architecture for HKOC_0991202
PFAM domain coverage: 221 / 614 aa (36.0%)
1 aa614 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[323-373] | HisKA[393-457] | HATPase_c[504-608]
- Domain count: 3
- Matched identifier: HKOC_0991202
- Positioned domains: HAMP 323-373 ; HisKA 393-457 ; HATPase_c 504-608
Cluster members and taxonomy
Representative gene: GCF_000290955#IC1_RS31065
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 718 222 · GCF_000398785
AssemblyBaci_cere_TIAC219_V2 · Scaffoldhaploid
Genome composition6 820 286 bp · 34,5% GCBacillus cereus TIAC219
Signal transduction countsGenes 111 · HK 60 · RR 50CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key