1 Response_reg#1
10-121 aa · 112 aa · 33.2% of protein
Raw token
Response_reg:10:2.61e-36:121:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
BC64_RS0105445
Response regulator, RsbU family
Escherichia coli TOP2522-1 · GCF_000397605
ClassRRTypeRsbULength337 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000397605#BC64_RS0105445Stable P2CS identifier used across views.
GenomeGCF_000397605Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia
Domain signature
Compact overview inferred from the domain field
Response_regSpoIIE
Protein length337 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage225 / 337 aa (66.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 SpoIIESummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa337 aa
Domain-by-domain annotation2 items
2 SpoIIE#2
195-307 aa · 113 aa · 33.5% of protein
Raw token
SpoIIE:195:0.0000759:307:121:190- Raw architecture: Response_reg:10:2.61e-36:121:112:111#SpoIIE:195:0.0000759:307:121:190
- Domain description: 1 Response_reg,1 SpoIIE
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000397605::NZ_AOQU01000042.1::G00013
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span147456-148469Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_000397605::NZ_AOQU01000042.1::G00013Context members
BC64_RS0105445
Partner locus tags
BC64_RS0105445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_020239145.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagBC64_RS0105445Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_AOQU01000042.1Sequence record reported by the local genomic context database.
Genomic interval147 456-148 469 nt1 014 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span147 456-148 469 ntGCF_000397605::NZ_AOQU01000042.1::G00013
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000397605::NZ_AOQU01000042.1::G00013Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_AOQU01000042.1All displayed genes belong to this local TCS context.
Neighborhood span147 456-148 469 nt1 014 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
147 456 nt148 469 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
BC64_RS0105445GCF_000397605#BC64_RS0105445
RRRsbUCurrent focus
147 456-148 469 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000397605#BC64_RS0105445The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_0505372
Simplified PFAM architecture for RROC_0505372
PFAM domain coverage: 111 / 337 aa (32.9%)
1 aa337 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[10-120]
- Domain count: 1
- Matched identifier: RROC_0505372
- Positioned domains: Response_reg 10-120 ; Response_reg 10-120
Cluster members and taxonomy
Representative gene: GCF_000397605#BC64_RS0105445
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 286 348 · GCF_000397605
AssemblyEc72_E2F1_TOP2522-1_120714 · Contighaploid
Genome composition4 657 618 bp · 51,0% GCEscherichia coli TOP2522-1
Signal transduction countsGenes 64 · HK 31 · RR 33CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomPseudomonadatiPhylumPseudomonadotaClassGammaproteobacteriaOrderEnterobacteralesFamilyEnterobacteriaceaeGenusEscherichia
Lineage path7 lineage nodes
1Bacteria2Pseudomonadati3Pseudomonadota4Gammaproteobacteria5Enterobacterales6Enterobacteriaceae7Escherichia
Related genes
Preview from the same derived genome key