1 Response_reg#1
4-122 aa · 119 aa · 49.8% of protein
Raw token
Response_reg:4:5.22e-16:122:120:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
UM9_RS08340
Response regulator LytTR family
Enterococcus faecalis EnGen0298 · GCF_000394895
ClassRRTypeLytTRLength239 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000394895#UM9_RS08340Stable P2CS identifier used across views.
GenomeGCF_000394895Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage209 / 239 aa (87.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 LytTR#2
150-239 aa · 90 aa · 37.7% of protein
Raw token
LytTR:150:1.52e-20:239:95:98- Raw architecture: Response_reg:4:5.22e-16:122:120:111#LytTR:150:1.52e-20:239:95:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000394895::NZ_KB947237.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span173103-173822Genomic interval covered by the local TCS group.
Identifiers
Old locus tagUM9_00768RefSeq proteinWP_010774730.1
Context group ID
GCF_000394895::NZ_KB947237.1::G00006Context members
UM9_RS08340
Partner locus tags
UM9_RS08340
Partner old locus tags
UM9_00768
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_010774730.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagUM9_RS08340Primary locus identifier stored in the genes table.
Old locus tagUM9_00768Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB947237.1Sequence record reported by the local genomic context database.
Genomic interval173 103-173 822 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span173 103-173 822 ntGCF_000394895::NZ_KB947237.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000394895::NZ_KB947237.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB947237.1All displayed genes belong to this local TCS context.
Neighborhood span173 103-173 822 nt720 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
173 103 nt173 822 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
UM9_RS08340GCF_000394895#UM9_RS08340
RRLytTRCurrent focus
173 103-173 822 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000393255#WOG_RS18225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0906813
Simplified PFAM architecture for RROC_0906813
PFAM domain coverage: 208 / 239 aa (87.0%)
1 aa239 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[4-122] | LytTR[151-239]
- Domain count: 2
- Matched identifier: RROC_0906813
- Positioned domains: Response_reg 4-122 ; Response_reg 4-122 ; LytTR 151-239 ; LytTR 151-239
Cluster members and taxonomy
Representative gene: GCF_000393255#WOG_RS18225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 158 658 · GCF_000394895
AssemblyEnte_faec_SF105_V1 · Scaffoldhaploid
Genome composition3 262 104 bp · 37,0% GCEnterococcus faecalis EnGen0298
Signal transduction countsGenes 29 · HK 13 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key