1 HAMP#1
186-251 aa · 66 aa · 13.5% of protein
Raw token
HAMP:186:0.0000000000000067:251:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
UM3_RS10525
Histidine kinase, Classic
Enterococcus faecalis EnGen0307 · GCF_000394835
ClassHKTypeClassicLength489 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000394835#UM3_RS10525Stable P2CS identifier used across views.
GenomeGCF_000394835Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length489 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 489 aa (49.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa489 aa
Domain-by-domain annotation3 items
2 HisKA#2
262-328 aa · 67 aa · 13.7% of protein
Raw token
HisKA:262:0.00000000000000485:328:67:643 HATPase_c#3
373-482 aa · 110 aa · 22.5% of protein
Raw token
HATPase_c:373:1.5e-30:482:110:109- Raw architecture: HAMP:186:0.0000000000000067:251:66:69#HisKA:262:0.00000000000000485:328:67:64#HATPase_c:373:1.5e-30:482:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000394835::NZ_KB947168.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span208740-210928Genomic interval covered by the local TCS group.
Identifiers
Old locus tagUM3_01290RefSeq proteinWP_002357872.1
Context group ID
GCF_000394835::NZ_KB947168.1::G00009Context members
UM3_RS10520UM3_RS10525
Partner locus tags
UM3_RS10520UM3_RS10525
Partner old locus tags
UM3_01289UM3_01290
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_002357872.1Primary protein accession used for annex mappings.
UniProt accessionQ835W1Primary UniProt accession resolved in the annex database.
UniProt IDQ835W1_ENTFADisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagUM3_RS10525Primary locus identifier stored in the genes table.
Old locus tagUM3_01290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB947168.1Sequence record reported by the local genomic context database.
Genomic interval209 459-210 928 nt1 470 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span208 740-210 928 ntGCF_000394835::NZ_KB947168.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000394835::NZ_KB947168.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB947168.1All displayed genes belong to this local TCS context.
Neighborhood span208 740-210 928 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
208 740 nt210 928 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
UM3_RS10520GCF_000394835#UM3_RS10520
RROmpR
208 740-209 459 nt · Forward (+)
UM3_RS10525GCF_000394835#UM3_RS10525
HKClassicCurrent focus
209 459-210 928 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000007785#EF_RS06080Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1541175
Simplified PFAM architecture for HKOC_1541175
PFAM domain coverage: 227 / 489 aa (46.4%)
1 aa489 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[200-251] | HisKA[263-327] | HATPase_c[374-483]
- Domain count: 3
- Matched identifier: HKOC_1541175
- Positioned domains: HAMP 200-251 ; HisKA 263-327 ; HATPase_c 374-483
Cluster members and taxonomy
Representative gene: GCF_000007785#EF_RS06080
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 158 655 · GCF_000394835
AssemblyEnte_faec_SF370_V1 · Scaffoldhaploid
Genome composition3 189 914 bp · 37,0% GCEnterococcus faecalis EnGen0307
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key