1 Response_reg#1
5-114 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:5:4.13e-35:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
UCM_RS16375
Response regulator OmpR family
Enterococcus faecalis EnGen0243 · GCF_000394195
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000394195#UCM_RS16375Stable P2CS identifier used across views.
GenomeGCF_000394195Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 231 aa (81.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
153-229 aa · 77 aa · 33.3% of protein
Raw token
Trans_reg_C:153:2.45e-31:229:77:77- Raw architecture: Response_reg:5:4.13e-35:114:111:111#Trans_reg_C:153:2.45e-31:229:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000394195::NZ_KB946477.1::G00014
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span448-2275Genomic interval covered by the local TCS group.
Identifiers
Old locus tagUCM_03183RefSeq proteinWP_001280781.1
Context group ID
GCF_000394195::NZ_KB946477.1::G00014Context members
UCM_RS16375UCM_RS16380
Partner locus tags
UCM_RS16375UCM_RS16380
Partner old locus tags
UCM_03183UCM_03184
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_001280781.1Primary protein accession used for annex mappings.
UniProt accessionA0A829EVS9Primary UniProt accession resolved in the annex database.
UniProt IDA0A829EVS9_ENTFCDisplay identifier provided by UniProt.
GO / PubMed7 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagUCM_RS16375Primary locus identifier stored in the genes table.
Old locus tagUCM_03183Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB946477.1Sequence record reported by the local genomic context database.
Genomic interval448-1 143 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span448-2 275 ntGCF_000394195::NZ_KB946477.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000394195::NZ_KB946477.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB946477.1All displayed genes belong to this local TCS context.
Neighborhood span448-2 275 nt1 828 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
448 nt2 275 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
UCM_RS16375GCF_000394195#UCM_RS16375
RROmpRCurrent focus
448-1 143 nt · Forward (+)
UCM_RS16380GCF_000394195#UCM_RS16380
HKClassic
1 121-2 275 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000147315#HMPREF9527_RS13810Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1158064
Simplified PFAM architecture for RROC_1158064
PFAM domain coverage: 186 / 231 aa (80.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-114] | Trans_reg_C[153-228]
- Domain count: 2
- Matched identifier: RROC_1158064
- Positioned domains: Response_reg 5-114 ; Response_reg 5-114 ; Trans_reg_C 153-228 ; Trans_reg_C 153-228
Cluster members and taxonomy
Representative gene: GCF_000147315#HMPREF9527_RS13810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 158 624 · GCF_000394195
AssemblyEnte_faec_SF28073_V1 · Scaffoldhaploid
Genome composition3 197 024 bp · 37,0% GCEnterococcus faecalis EnGen0243
Signal transduction countsGenes 31 · HK 14 · RR 17CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key