1 Response_reg#1
3-113 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:3:1.94e-27:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WOG_RS10150
Response regulator OmpR family
Enterococcus faecalis EnGen0370 · GCF_000393255
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000393255#WOG_RS10150Stable P2CS identifier used across views.
GenomeGCF_000393255Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 239 aa (75.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-233 aa · 70 aa · 29.3% of protein
Raw token
Trans_reg_C:164:3.8e-37:233:72:77- Raw architecture: Response_reg:3:1.94e-27:113:111:111#Trans_reg_C:164:3.8e-37:233:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000393255::NZ_KB944800.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span229111-231299Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWOG_01277RefSeq proteinWP_010774573.1
Context group ID
GCF_000393255::NZ_KB944800.1::G00007Context members
WOG_RS10150WOG_RS10155
Partner locus tags
WOG_RS10150WOG_RS10155
Partner old locus tags
WOG_01277WOG_01278
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_010774573.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWOG_RS10150Primary locus identifier stored in the genes table.
Old locus tagWOG_01277Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB944800.1Sequence record reported by the local genomic context database.
Genomic interval229 111-229 830 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span229 111-231 299 ntGCF_000393255::NZ_KB944800.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000393255::NZ_KB944800.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB944800.1All displayed genes belong to this local TCS context.
Neighborhood span229 111-231 299 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
229 111 nt231 299 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
WOG_RS10150GCF_000393255#WOG_RS10150
RROmpRCurrent focus
229 111-229 830 nt · Forward (+)
WOG_RS10155GCF_000393255#WOG_RS10155
HKClassic
229 830-231 299 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000393255#WOG_RS10150The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0906812
Simplified PFAM architecture for RROC_0906812
PFAM domain coverage: 182 / 239 aa (76.2%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-114] | Trans_reg_C[164-233]
- Domain count: 2
- Matched identifier: RROC_0906812
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; Trans_reg_C 164-233 ; Trans_reg_C 164-233
Cluster members and taxonomy
Representative gene: GCF_000393255#WOG_RS10150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 169 305 · GCF_000393255
AssemblyEnte_faec_SF339_V1 · Scaffoldhaploid
Genome composition3 122 345 bp · 37,5% GCEnterococcus faecalis EnGen0370
Signal transduction countsGenes 29 · HK 13 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key