1 Response_reg#1
6-114 aa · 109 aa · 45.4% of protein
Raw token
Response_reg:6:3.02e-22:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WOC_RS03245
Response regulator OmpR family
Enterococcus faecalis EnGen0357 · GCF_000393215
ClassRRTypeOmpRLength240 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_000393215#WOC_RS03245Stable P2CS identifier used across views.
GenomeGCF_000393215Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length240 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 240 aa (76.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa240 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
158-231 aa · 74 aa · 30.8% of protein
Raw token
Trans_reg_C:158:2.2e-29:231:75:77- Raw architecture: Response_reg:6:3.02e-22:114:109:111#Trans_reg_C:158:2.2e-29:231:75:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_000393215::NZ_KB944764.1::G00002
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span45533-46255Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWOC_00041RefSeq proteinWP_010824887.1
Context group ID
GCF_000393215::NZ_KB944764.1::G00002Context members
WOC_RS03245
Partner locus tags
WOC_RS03245
Partner old locus tags
WOC_00041
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_010824887.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWOC_RS03245Primary locus identifier stored in the genes table.
Old locus tagWOC_00041Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB944764.1Sequence record reported by the local genomic context database.
Genomic interval45 533-46 255 nt723 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span45 533-46 255 ntGCF_000393215::NZ_KB944764.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000393215::NZ_KB944764.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB944764.1All displayed genes belong to this local TCS context.
Neighborhood span45 533-46 255 nt723 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 533 nt46 255 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
WOC_RS03245GCF_000393215#WOC_RS03245
RROmpRCurrent focus
45 533-46 255 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000393215#WOC_RS03245The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0883151
Simplified PFAM architecture for RROC_0883151
PFAM domain coverage: 183 / 240 aa (76.3%)
1 aa240 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-114] | Trans_reg_C[158-231]
- Domain count: 2
- Matched identifier: RROC_0883151
- Positioned domains: Response_reg 6-114 ; Response_reg 6-114 ; Trans_reg_C 158-231 ; Trans_reg_C 158-231
Cluster members and taxonomy
Representative gene: GCF_000393215#WOC_RS03245
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 169 303 · GCF_000393215
AssemblyEnte_faec_Fly_2_V1 · Scaffoldhaploid
Genome composition2 791 828 bp · 37,5% GCEnterococcus faecalis EnGen0357
Signal transduction countsGenes 28 · HK 12 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key