1 HAMP#1
182-247 aa · 66 aa · 13.6% of protein
Raw token
HAMP:182:0.00000000000000794:247:66:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
WMY_RS08805
Histidine kinase, Classic
Enterococcus faecalis EnGen0337 · GCF_000393075
ClassHKTypeClassicLength485 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000393075#WMY_RS08805Stable P2CS identifier used across views.
GenomeGCF_000393075Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length485 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 485 aa (50.1%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa485 aa
Domain-by-domain annotation3 items
2 HisKA#2
258-324 aa · 67 aa · 13.8% of protein
Raw token
HisKA:258:0.00000000000000525:324:67:643 HATPase_c#3
369-478 aa · 110 aa · 22.7% of protein
Raw token
HATPase_c:369:1.85e-30:478:110:109- Raw architecture: HAMP:182:0.00000000000000794:247:66:69#HisKA:258:0.00000000000000525:324:67:64#HATPase_c:369:1.85e-30:478:110:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000393075::NZ_KB944678.1::G00009
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span207525-209701Genomic interval covered by the local TCS group.
Identifiers
Old locus tagWMY_01117RefSeq proteinWP_002407008.1
Context group ID
GCF_000393075::NZ_KB944678.1::G00009Context members
WMY_RS08800WMY_RS08805
Partner locus tags
WMY_RS08800WMY_RS08805
Partner old locus tags
WMY_01116WMY_01117
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_002407008.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagWMY_RS08805Primary locus identifier stored in the genes table.
Old locus tagWMY_01117Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB944678.1Sequence record reported by the local genomic context database.
Genomic interval208 244-209 701 nt1 458 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span207 525-209 701 ntGCF_000393075::NZ_KB944678.1::G00009
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000393075::NZ_KB944678.1::G00009Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB944678.1All displayed genes belong to this local TCS context.
Neighborhood span207 525-209 701 nt2 177 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
207 525 nt209 701 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
WMY_RS08800GCF_000393075#WMY_RS08800
RROmpR
207 525-208 244 nt · Forward (+)
WMY_RS08805GCF_000393075#WMY_RS08805
HKClassicCurrent focus
208 244-209 701 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000148265#HMPREF9510_RS04150Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1575864
Simplified PFAM architecture for HKOC_1575864
PFAM domain coverage: 227 / 485 aa (46.8%)
1 aa485 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[196-247] | HisKA[259-323] | HATPase_c[370-479]
- Domain count: 3
- Matched identifier: HKOC_1575864
- Positioned domains: HAMP 196-247 ; HisKA 259-323 ; HATPase_c 370-479
Cluster members and taxonomy
Representative gene: GCF_000148265#HMPREF9510_RS04150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 169 296 · GCF_000393075
AssemblyEnte_faec_T18_V1 · Scaffoldhaploid
Genome composition2 926 625 bp · 37,5% GCEnterococcus faecalis EnGen0337
Signal transduction countsGenes 29 · HK 13 · RR 16CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key