1 Response_reg#1
3-113 aa · 111 aa · 46.4% of protein
Raw token
Response_reg:3:2.4e-28:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
SCU_RS09625
Response regulator OmpR family
Enterococcus faecalis EnGen0118 · GCF_000391725
ClassRRTypeOmpRLength239 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_000391725#SCU_RS09625Stable P2CS identifier used across views.
GenomeGCF_000391725Bacteria; Bacillati; Bacillota; Bacilli; Lactobacillales; Enterococcaceae; Enterococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length239 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage181 / 239 aa (75.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa239 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
164-233 aa · 70 aa · 29.3% of protein
Raw token
Trans_reg_C:164:5.79e-37:233:72:77- Raw architecture: Response_reg:3:2.4e-28:113:111:111#Trans_reg_C:164:5.79e-37:233:72:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_000391725::NZ_KB932601.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span315038-317226Genomic interval covered by the local TCS group.
Identifiers
Old locus tagSCU_01259RefSeq proteinWP_010717577.1
Context group ID
GCF_000391725::NZ_KB932601.1::G00010Context members
SCU_RS09625SCU_RS09630
Partner locus tags
SCU_RS09625SCU_RS09630
Partner old locus tags
SCU_01259SCU_01260
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_010717577.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagSCU_RS09625Primary locus identifier stored in the genes table.
Old locus tagSCU_01259Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_KB932601.1Sequence record reported by the local genomic context database.
Genomic interval315 038-315 757 nt720 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span315 038-317 226 ntGCF_000391725::NZ_KB932601.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_000391725::NZ_KB932601.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_KB932601.1All displayed genes belong to this local TCS context.
Neighborhood span315 038-317 226 nt2 189 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
315 038 nt317 226 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
SCU_RS09625GCF_000391725#SCU_RS09625
RROmpRCurrent focus
315 038-315 757 nt · Forward (+)
SCU_RS09630GCF_000391725#SCU_RS09630
HKClassic
315 757-317 226 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000391605#SCG_RS09595Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0906805
Simplified PFAM architecture for RROC_0906805
PFAM domain coverage: 182 / 239 aa (76.2%)
1 aa239 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[3-114] | Trans_reg_C[164-233]
- Domain count: 2
- Matched identifier: RROC_0906805
- Positioned domains: Response_reg 3-114 ; Response_reg 3-114 ; Trans_reg_C 164-233 ; Trans_reg_C 164-233
Cluster members and taxonomy
Representative gene: GCF_000391605#SCG_RS09595
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 157 377 · GCF_000391725
AssemblyEnte_faec_UAA943_V1 · Scaffoldhaploid
Genome composition2 957 369 bp · 37,5% GCEnterococcus faecalis EnGen0118
Signal transduction countsGenes 35 · HK 16 · RR 19CheA 0 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderLactobacillalesFamilyEnterococcaceaeGenusEnterococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Lactobacillales6Enterococcaceae7Enterococcus
Related genes
Preview from the same derived genome key